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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
gene expression
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
snRNA-seq
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
51
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
14
endothelial cell of hepatic sinusoid
12
hepatocyte
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
pancreatic ductal cell
7
GM12878
7
regulatory T cell
6
H9
6
T-helper 1 cell
6
endothelial cell
6
fibroblast
6
lymphocyte
6
olfactory receptor cell
6
skeletal muscle fiber
5
HUES8
5
adipocyte
5
left cardiac atrium
5
smooth muscle cell
4
CyT49
T-helper 17 cell
4
iPSC derived cell line
4
macrophage
4
mesenchymal stem cell
3
B cell
3
Schwann cell
3
T cell
3
enterocyte
3
hepatocyte(AFP)
3
myofibroblast cell
3
pancreatic acinar cell
3
stomach
3
type I muscle cell
3
type II muscle cell
2
CD4-positive helper T cell
2
GM18507
2
GM19240
2
HCT116
2
Rh-4 cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
basal cell
2
bone marrow cell
2
differentiating adipose-derived stem cell
2
epithelial cell of esophagus
2
erythroid cell
2
fibroblast of cardiac tissue
2
glial cell
2
goblet cell
2
heart
2
islet of Langerhans
2
large intestine
2
leukocyte
2
liver
2
mammary gland epithelial cell
2
monocyte
2
neural cell
2
osteoblast
2
pancreas
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
skeletal muscle satellite cell
2
skin fibroblast
2
spinal cord
2
vascular associated smooth muscle cell
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Ammon's horn
1
B-1a B cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM13976
1
GM13977
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HeLa cell
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY7
1
PA-TU-8988T cell
1
PANC-1 cell
1
PC-3
1
PC-9
1
Peyer's patch
1
RCC 7860
1
REH cell
1
RKO
1
RPMI7951
1
RPMI8226
1
RS4-11 cell
1
RWPE1
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SGBS preadipocytes
1
SJCRH30
1
SJSA1
1
SK-CO-1
1
SK-N-DZ
1
SK-N-MC
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SUDHL5
1
SW1116
Organ
5
connective tissue
Date released
6
September, 2022
5
February, 2021
4
August, 2017
4
February, 2024
4
May, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
3
macs
1
deeptools
1
deltasvm
1
r
1
samtools
1
umitools
Lab
2
AMP-T2D consortium
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
5
AMP
RFA
3
AMP
2
AMP2
biosample_term_name!
T-helper 17 cell
files.file_type!
bigBed bed9
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP