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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
bed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
primary cell
Biosample term
39
A549
26
hematopoietic multipotent progenitor cell
23
retina
20
liver
20
pigmented layer of retina
19
adrenal gland
18
adipose tissue
18
body of pancreas
17
islet of Langerhans
17
stomach
17
subcutaneous adipose tissue
17
tibial nerve
16
omental fat pad
spleen
15
caudate nucleus
14
MCF-7
13
K562
12
ascending aorta
12
gastrocnemius medialis
12
heart left ventricle
12
pancreas
12
right atrium auricular region
12
sigmoid colon
12
substantia nigra
12
thyroid gland
12
transverse colon
11
cerebellum
11
coronary artery
11
tibial artery
10
Peyer's patch
10
frontal cortex
10
ovary
10
putamen
10
upper lobe of left lung
9
Ammon's horn
9
endocrine pancreas
9
layer of hippocampus
9
psoas muscle
8
HeLa-S3
8
esophagus squamous epithelium
8
lower leg skin
8
right lobe of liver
7
aorta
7
breast epithelium
7
esophagus muscularis mucosa
7
parathyroid adenoma
7
skeletal muscle tissue
7
temporal lobe
7
testis
7
vagina
6
angular gyrus
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
kidney
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
prostate gland
6
small intestine
6
stomach smooth muscle
6
thoracic aorta
5
C1 segment of cervical spinal cord
5
LNCaP clone FGC
5
T47D
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
hypothalamus
5
left ventricle myocardium
5
lung
5
middle frontal gyrus
5
nucleus accumbens
5
subcutaneous abdominal adipose tissue
5
uterus
4
Brodmann (1909) area 46
4
GM12878
4
adipocyte
4
bone tissue
4
cartilage tissue
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
heart
4
heart right ventricle
4
medulla oblongata
4
midbrain
4
muscle cell
4
pons
4
superior temporal gyrus
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
Caki2
3
DOHH2
3
GM04503
3
GM04504
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
KBM-7
3
KMS-11
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJSA1
3
SK-MEL-5
3
SU-DHL-6
3
SW480
3
bipolar neuron
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
mucosa of stomach
3
occipital lobe
3
right cardiac atrium
3
suprapubic skin
3
urinary bladder
3
visceral abdominal adipose tissue
2
8988T
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AG20443
2
COLO829
2
Caco-2 cell
2
GM10248
2
GM10266
2
GM12875
2
GM19238
2
GM19239
2
GM19240
2
HPDE6-E6E7
2
HuH-7
2
HuH-7.5
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
NCI-H226 cell
2
VCaP cell
2
blood
2
cardiomyocytes (cardiac muscle cell)
2
iPS-NIHi11
2
iPS-NIHi7
2
inferior parietal cortex
2
lymphocyte of B lineage (iPSC)
2
mesenchymal stem cell
2
middle frontal area 46
2
olfactory neurosphere cell line
2
rectum smooth muscle tissue
2
renal cell carcinoma
1
A-673 cell
1
AG09309
1
AG09319
1
Caco-2
1
HepG2
1
Ishikawa
1
Karpas-422
1
LoVo
1
NCI-H226
1
RCC
1
VCaP
1
aorta wall
1
bladder
1
breast - mammary tissue
1
cells - EBV-transformed lymphocytes
1
cerebrospinal fluid
1
cervix - ectocervix
Organ
4
connective tissue
Life stage
4
adult
3
unknown
Date released
2
February, 2021
2
September, 2022
Software used
3
r
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
spleen
biosample_type!
primary cell
files.file_type!
bed bed9
Showing 4 of 4 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP