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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
variant allelic effects
Annotation Category
4
Target gene links
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ATAC-seq
4
DNase-seq
4
H3K27ac ChIP-Seq
4
snATAC-seq
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
primary cell
Biosample term
29
endothelial cell
29
fibroblast
22
macrophage
21
pericyte cell
17
smooth muscle cell
16
endothelial cell of hepatic sinusoid
15
CD14-positive monocyte
15
hepatocyte
15
kidney
14
pancreatic acinar cell
14
pancreatic ductal cell
13
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic delta cell
12
excitatory neuron
10
astrocyte
10
pituitary stalk
9
pancreatic stellate cell
8
B cell
8
T cell
8
adipocyte
8
dendritic cell
8
induced pluripotent stem cell
8
natural killer cell
7
CD8-positive, alpha-beta T cell
7
endothelial cell of lymphatic vessel
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
keratinocyte
6
mast cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
endocardial cell
5
inhibitory neuron
5
left cardiac atrium
5
myofibroblast cell
5
pancreatic endothelial cell
5
skeletal muscle fiber
4
blood vessel smooth muscle cell
4
cartilage tissue
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesothelial cell
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
ciliated cell
3
club cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
islet of Langerhans
3
liver
3
mammary gland epithelial cell
3
megakaryocyte
3
monocyte
3
neuronal stem cell
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
articular chondrocyte
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
hepatic stellate cell
2
intestinal tuft cell
2
kidney distal convoluted tubule epithelial cell
2
luteal cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
renal principal cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
subcutaneous adipose tissue
2
trophoblast cell
Disease term
2
heart failure
Organ
8
connective tissue
Life stage
2
adult
Date released
4
May, 2021
2
May, 2024
1
February, 2024
1
November, 2021
Software used
4
abc
1
deltasvm
1
macs
Lab
AMP-T2D consortium
Stephen Parker, UMich
4
Jesse Engreitz, Stanford University
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Project
7
AMP
1
ENCODE
RFA
5
AMP
2
AMP2
1
ENCODE3
biosample_term_name!
Mesangial Cell
lab.title!
AMP-T2D consortium
Stephen Parker, UMich
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP