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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
gene expression
1
variant allelic effects
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
14
endothelial cell of hepatic sinusoid
11
hepatocyte
6
endothelial cell
6
fibroblast
6
skeletal muscle fiber
5
left cardiac atrium
5
smooth muscle cell
4
pancreatic ductal cell
3
Schwann cell
3
adipocyte
3
enterocyte
3
macrophage
3
mesenchymal stem cell
3
myofibroblast cell
3
pancreatic acinar cell
3
type I muscle cell
3
type II muscle cell
2
T cell
2
basal cell
2
epithelial cell of esophagus
2
glial cell
2
goblet cell
2
leukocyte
2
neural cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
skeletal muscle satellite cell
2
vascular associated smooth muscle cell
1
CD4-positive helper T cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cortical cell of adrenal gland
1
granulosa cell
1
keratinocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
thyroid follicular cell
1
tissue-resident macrophage
1
type B pancreatic cell
1
type II pneumocyte
Organ
3
connective tissue
Date released
5
May, 2021
4
August, 2017
3
February, 2024
2
May, 2024
1
November, 2021
Software used
1
deeptools
1
deltasvm
1
macs
1
r
1
samtools
1
umitools
Lab
2
Stephen Parker, UMich
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
RFA
2
AMP2
1
AMP
lab.title!
AMP-T2D consortium
Showing 3 of 3 results
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Download
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP