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Citing CMDGA
Clear Filters
Annotation type
2
hQTL
1
eQTL
1
meQTL
1
sQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
DNA methylation profiling by array assay
Available data
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
5
monocyte
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
Life stage
5
adult
Date released
5
May, 2021
Software used
10
macs
10
r
8
chromhmm
5
limix
4
abc
4
encode-ccres
1
chicago
1
deeptools
1
deltasvm
1
minfi
1
qTLtools
1
samtools
1
sqtlseeker
1
umitools
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
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Showing 5 of 5 results
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FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR197ERC
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR804HBZ
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K4me1 ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR676ZHI
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR792EUZ
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP