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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
gene expression
Annotation Category
2
Gene expression levels
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
RNA-seq
1
snRNA-seq
Available data
bed bed3+
2
bed bed9
2
bigWig
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
14
subcutaneous adipose tissue
12
adipose tissue
9
omental fat pad
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
mesangial cell
5
pancreatic stellate cell
4
adipocyte
4
bone tissue
4
visceral abdominal adipose tissue
3
adult endothelial progenitor cell
3
cartilage tissue
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
mesenchymal stem cell
3
osteoblast
3
pancreatic quiescent stellate cell
2
articular chondrocyte
2
fibroblast
2
foreskin fibroblast
2
hepatic stellate cell
2
skin fibroblast
1
GM23248
1
HT1080
1
activated pancreatic stellate cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
fat cell
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
pericyte cell
1
quiescent pancreatic stellate cell
1
stromal cell of bone marrow
Organ
4
connective tissue
Life stage
2
adult
1
unknown
Date released
2
September, 2022
1
February, 2021
1
February, 2024
Software used
2
chromhmm
2
r
1
deeptools
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
files.file_type!
bed bed3+
bigBed bed9
month_released!
May, 2020
Showing 4 of 4 results
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FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP