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Schema
Citing CMDGA
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Assay category
4
DNA binding
1
DNA accessibility
Assay
4
ChIP-seq
1
ATAC-seq
1
Capture-C
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Target of assay
3
transcription factor
1
control
Biosample type
6
in vitro differentiated cells
Organ
6
connective tissue
Life stage
6
unknown
Available data
50
bam
47
bigWig
46
fastq
41
bed narrowPeak
14
tagAlign
6
bed bed3+
4
bed bedgraph
4
tsv
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Platform
2
Illumina HiSeq 2000
1
HiSeq 1500
1
Illumina Genome Analyzer II
Run type
4
single-ended
Read length (nt)
3
50
2
37
2
40
1
38
1
67
Library made from
6
DNA
Date released
4
August, 2017
1
August, 2021
1
February, 2023
Lab
5
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Replication type
6
anisogenic
Audit category:
1
inconsistent control read length
files.read_length!
50
51
Showing 6 of 6 results
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Experiment
DSR657VBF
released
ATAC-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
TSTSR659518
released
Audit warning
1
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
RELA
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR812164
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
EBF1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR465195
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR080417
released
ChIP-seq
of adipocyte
Homo sapiens
adipocyte
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP