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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
gene expression
1
variant allelic effects
Annotation Category
2
Target gene links
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
snATAC-seq
1
snRNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
Biosample term
42
heart
39
stomach
36
A549
34
brain
33
lung
33
muscle of arm
30
small intestine
29
adrenal gland
29
kidney
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
26
muscle of leg
22
right lung
22
thymus
21
hematopoietic multipotent progenitor cell
21
right kidney
19
renal cortex interstitium
19
renal pelvis
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
16
liver
15
monocyte
15
neural progenitor cell
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
13
T-helper 1 cell
13
T-helper 17 cell
13
adipose tissue
13
heart left ventricle
13
regulatory T cell
13
spleen
12
K562
12
mononuclear cell
11
body of pancreas
11
hepatocyte
10
H1-hESC
10
MCF-7
10
T cell
10
pancreatic ductal cell
10
sigmoid colon
10
tibial nerve
10
trophoblast cell
9
EndoC_BH1
9
T-helper 2 cell
9
extended pluripotent stem (EPS) cells
9
ovary
9
progenitor cell of endocrine pancreas
8
CD14-positive monocyte
8
caudate nucleus
8
chorionic villus
8
endocrine pancreas
8
endothelial cell
8
foreskin keratinocyte
8
gastrocnemius medialis
8
heart right ventricle
8
islet of Langerhans
8
muscle of trunk
8
psoas muscle
8
retina
8
right atrium auricular region
8
thyroid gland
8
transverse colon
7
coronary artery
7
frontal cortex
7
mammary gland epithelial cell
7
natural killer cell
7
pancreatic acinar cell
7
pancreatic beta cell
7
pancreatic delta cell
7
skeletal muscle tissue
7
testis
7
tibial artery
6
HeLa-S3
6
Peyer's patch
6
adipocyte
6
cerebellum
6
chorion membrane
6
endometrium adenocarcinoma
6
fibroblast
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
naive T cell
6
neurosphere
6
omental fat pad
6
pancreatic alpha cell
6
skeletal muscle myoblast
6
smooth muscle cell
6
upper lobe of left lung
5
aorta
5
ascending aorta
5
endothelial cell of umbilical vein
5
epithelial cell of proximal tubule
5
glomerular endothelial cell
5
keratinocyte
5
kidney tubule cell
5
left renal cortex interstitium
5
left renal pelvis
5
macrophage
5
mesenchymal stem cell
5
pancreas
5
pancreatic stellate cell
5
right renal cortex interstitium
5
right renal pelvis
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
vagina
4
22Rv1
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
angular gyrus
4
breast epithelium
4
bronchial epithelial cell
4
cardiac muscle cell
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of esophagus
4
epithelial cell of prostate
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
glomerular visceral epithelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
left cardiac atrium
4
limb
4
lower leg skin
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
occipital lobe
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
parathyroid adenoma
4
prostate gland
4
putamen
4
renal cortical epithelial cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
skin fibroblast
4
stomach smooth muscle
4
tongue
4
trophoblast
4
urinary bladder
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
Organ
6
connective tissue
Life stage
2
adult
2
unknown
Date released
4
September, 2022
2
February, 2024
February, 2021
Software used
6
chromhmm
6
macs
5
r
4
abc
1
deeptools
1
deltasvm
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
month_released!
February, 2021
Showing 6 of 6 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619LYX
released
Annotation file set
: Target gene predictions for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP