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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
chromatin state
1
candidate regulatory elements
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
7
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
57
heart
57
stomach
54
A549
48
brain
48
lung
48
muscle of arm
45
small intestine
42
adrenal gland
42
kidney
42
placenta
39
left lung
39
muscle of back
39
muscle of leg
38
large intestine
33
right lung
33
thymus
30
common myeloid progenitor, CD34-positive
30
right kidney
27
hematopoietic multipotent progenitor cell
27
left kidney
27
renal cortex interstitium
27
renal pelvis
23
liver
21
spinal cord
19
K562
18
B cell
18
adipose tissue
18
spleen
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
heart left ventricle
15
mononuclear cell
15
sigmoid colon
15
trophoblast cell
12
body of pancreas
12
chorionic villus
12
foreskin keratinocyte
12
gastrocnemius medialis
12
muscle of trunk
12
neural progenitor cell
12
ovary
12
psoas muscle
12
thyroid gland
12
transverse colon
10
caudate nucleus
10
layer of hippocampus
9
CD14-positive monocyte
9
CD4-positive, alpha-beta memory T cell
9
HeLa-S3
9
Peyer's patch
9
T cell
9
endocrine pancreas
9
endometrium adenocarcinoma
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
natural killer cell
9
neurosphere
9
retina
9
testis
9
tibial nerve
9
upper lobe of left lung
8
HepG2
7
adipocyte
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
endothelial cell of umbilical vein
7
mucosa of rectum
7
pancreas
7
stomach smooth muscle
7
substantia nigra
7
temporal lobe
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
T-helper 1 cell
6
T-helper 2 cell
6
T47D
6
angular gyrus
6
aorta
6
ascending aorta
6
breast epithelium
6
cerebellum
6
chorion membrane
6
coronary artery
6
dermis blood vessel endothelial cell
6
endodermal cell
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
foreskin fibroblast
6
frontal cortex
6
kidney tubule cell
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
omental fat pad
6
parathyroid adenoma
6
prostate gland
6
regulatory T cell
6
right atrium auricular region
6
right renal cortex interstitium
6
right renal pelvis
6
skeletal muscle tissue
6
skin fibroblast
6
thoracic aorta
6
tibial artery
6
tongue
6
trophoblast
6
urinary bladder
6
vagina
4
GM12878
4
H1-hESC
4
fibroblast of lung
4
rectum smooth muscle tissue
4
skeletal muscle myoblast
3
8988T
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CMK
3
COLO829
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
H7-hESC
3
H9
3
HAP-1
3
HCT116
3
HEK293
3
HEK293T
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
HuH-7
3
HuH-7.5
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
LHCN-M2
3
LoVo cell
3
Loucy
3
M059J
Organ
7
connective tissue
Life stage
3
adult
unknown
Date released
4
August, 2017
4
February, 2021
4
February, 2024
4
May, 2021
3
September, 2022
2
May, 2024
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
5
chromhmm
2
r
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
7
AMP
relevant_life_stage!
unknown
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR339QKV
released
Annotation file set
: Target gene predictions for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP