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Schema
Citing CMDGA
Clear Filters
Annotation type
5
gene expression
2
target gene predictions
1
accessible chromatin
Annotation Category
5
Gene expression levels
2
Target gene links
1
cis-regulatory elements
Annotation type Category
4
scRNA-seq
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
1
RNA-seq
Available data
5
tsv
3
bed bed3+
3
txt
1
bigWig
File set status
8
released
Genome assembly (visualization)
3
hg19
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
tissue
1
in vitro differentiated cells
Biosample term
118
monocyte
35
CD8-positive, alpha-beta T cell
31
neural progenitor cell
15
CD14-positive monocyte
15
EndoC_BH1
11
embryonic stem cell
11
islet of Langerhans
10
pituitary stalk
9
H1-hESC
8
kidney
7
dendritic cell
7
liver
6
endothelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
4
adipocyte
4
cartilage tissue
4
hepatocyte
3
B cell
3
T-helper 17 cell
3
adipose tissue
3
macrophage
3
subcutaneous adipose tissue
2
BJAB cell
2
CD4-positive helper T cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adrenal gland
2
blood
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
kidney distal convoluted tubule epithelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
regulatory T cell
2
renal principal cell
2
stomach
2
trophoblast cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Schwann cell
1
activated pancreatic stellate cell
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
cerebrospinal fluid
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cytotoxic T cell
1
effector CD8-positive, alpha-beta T cell
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart
1
heart right ventricle
1
hematopoietic multipotent progenitor cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
inflammatory macrophage
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
keratinocyte
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
left cardiac atrium
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mitral valve
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
naive regulatory T cell
1
neuronal stem cell
1
omental fat pad
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic epsilon cell
1
pancreatic polypeptide-secreting cell
1
placenta
1
progenitor cell
1
proximal tubule cells with injury markers
1
psoas muscle
1
pulmonary valve
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
right cardiac atrium
1
sigmoid colon
1
skeletal muscle myoblast
1
skeletal muscle tissue
1
small intestine
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stem cell
1
synovial joint
1
thymus
1
thyroid gland
1
transverse colon
1
tricuspid valve
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
6
epithelium
2
adrenal gland
Life stage
5
adult
Date released
42
September, 2022
21
February, 2021
16
November, 2021
6
February, 2024
4
August, 2021
4
May, 2021
2
January, 2021
2
May, 2022
1
February, 2023
1
January, 2022
1
June, 2020
1
March, 2020
1
March, 2024
1
October, 2022
Software used
5
r
3
seurat
2
abc
1
macs
Lab
4
Katalin Susztak, Upenn
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
4
AMP
4
AMP2
biosample_term_name!
endothelial cell of umbilical vein
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR771OBM
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR777OUF
released
Annotation file set
: enhancer-gene predicton of adrenal_gland_fetal-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR262RCW
released
Annotation file set
: enhancer-gene predicton of adrenal_gland-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP