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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
105
monocyte
32
CD8-positive, alpha-beta T cell
16
fibroblast
12
excitatory neuron
11
macrophage
9
astrocyte
9
osteoblast
9
pericyte cell
9
smooth muscle cell
6
glutamatergic neuron
5
T cell
5
erythroblast
5
foreskin fibroblast
5
inhibitory neuron
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
acute myeloid leukemia cell
4
hepatic stellate cell
4
preadipocyte
3
cardiac fibroblast
3
B cell
3
CD1c-positive myeloid dendritic cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
aortic adventitial fibroblast
3
bone marrow cell
3
erythroid cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
mammary epithelial cell
3
mast cell
3
mononuclear cell of bone marrow
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neoplastic cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
renal epithelial cell
3
skeletal muscle myoblast
3
type I muscle cell
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
adipocyte
2
blood vessel smooth muscle cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid progenitor cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
glial cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mature neutrophil
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesenchymal stem cell
2
myotube
2
natural killer cell
2
neuron
2
neuronal stem cell
2
neutrophil
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic stellate cell
2
peripheral blood mononuclear cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
schwann cell
2
skin fibroblast
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
trophoblast cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
Glioblastoma
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
T-helper 1 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
alveolar cell type II
1
alveolar macrophage
1
aortic smooth muscle cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell
1
bone cell
1
brain pericyte
1
cardiac muscle cell
1
ciliated cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of peridontal ligament
1
granulocyte
1
head and neck neoplasia
1
hepatoblast
1
induced T-regulatory cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney interstitial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
melanocyte
1
meningioma cell
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
mononuclear cell
1
mycosis fungoides
1
myeloid leukocyte
1
myofibroblast cell
1
naive B cell
1
naive t cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neural progenitor cell
1
neutrophil progenitor cell
1
non-classical monocyte
1
non-neuronal cell
1
pancreatic endocrine cell
1
pancreatic immune cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
plasmacytoid dendritic cell
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
retinal bipolar neuron
1
seminoma cell
1
skeletal muscle cell
1
skeletal muscle fibroblast
1
smooth muscle cell of the brain vasculature
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stromal cell
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Date released
1
November, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
Lab
1
Bing Ren, UCSD
Project
1
ENCODE
RFA
1
ENCODE3
organ_slims!
epithelium
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR542FSB
released
Annotation file set
: Accessible chromatin annotation of Melanocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE