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Annotation type
3
gene expression
1
caQTL
Annotation Category
3
Gene expression levels
1
Genetic variant effects
Annotation type Category
3
scRNA-seq
1
snATAC-seq
Available data
3
tsv
3
txt
1
bed bed3+
File set status
4
released
Genome assembly (visualization)
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
endothelial cell
2
macrophage
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
coronary artery
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
fibroblast of the aortic adventitia
1
glomerular endothelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
liver
1
natural killer cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal principal cell
1
smooth muscle cell of the coronary artery
Organ
4
epithelium
Life stage
3
adult
Date released
3
August, 2021
1
February, 2023
October, 2022
Software used
20
macs
15
r
6
abc
3
chromhmm
3
deltasvm
3
seurat
2
encode-ccres
1
cicero
1
deeptools
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
Katalin Susztak, Upenn
1
AMP-T2D consortium
Project
4
AMP
RFA
3
AMP2
1
AMP
month_released!
October, 2022
Showing 4 of 4 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP