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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
gene expression
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Gene expression levels
Annotation type Category
5
ChIP-seq
4
DNase-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
49
CD8-positive, alpha-beta T cell
49
liver
48
thymus
45
right lung
44
B cell
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
spinal cord
34
heart left ventricle
34
hepatocyte
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
28
regulatory T cell
26
MCF-7
26
adipocyte
26
natural killer cell
25
endothelial cell
25
tibial nerve
24
body of pancreas
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
glomerular endothelial cell
21
macrophage
21
pancreatic ductal cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
cardiac muscle cell
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
keratinocyte
16
layer of hippocampus
16
pancreatic beta cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
GM12878
15
T cell
15
ascending aorta
15
cerebellum
15
frontal cortex
15
neutrophil
15
pancreatic alpha cell
15
retinal pigment epithelial cell
14
H9
14
endocrine pancreas
14
endothelial cell of hepatic sinusoid
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
mammary gland epithelial cell
13
neurosphere
13
pancreatic delta cell
13
temporal lobe
12
Ammon's horn
12
CD4-positive, alpha-beta T cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
12
pancreatic acinar cell
11
breast epithelium
11
epithelial cell of prostate
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
11
smooth muscle cell
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
skeletal muscle satellite cell
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
renal cortical epithelial cell
7
right lobe of liver
7
skin fibroblast
Life stage
4
unknown
1
embryonic
Date released
3
September, 2022
2
February, 2021
1
February, 2024
1
January, 2022
1
May, 2021
Software used
3
r
2
macs
1
abc
1
chromhmm
1
encode-ccres
Lab
Bing Ren, UCSD
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
WERI-Rb-1
lab.title!
Bing Ren, UCSD
month_released!
July, 2020
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR223CRF
released
Annotation file set
: Candidate regulatory elements for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR846FJI
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_human primary fetal astrocytes batch 2; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR977NGV
released
Annotation file set
: Gene expression annotation of RNA-seq_human primary fetal astrocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR488ZSW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR720CZQ
released
Annotation file set
: Histone modifications annotation for Neural Astrocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP