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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
2
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
5
ChIP-seq
4
DNase-seq
3
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
15
bed bed3+
bigWig
1
bed bed9
tsv
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
100
monocyte
85
stomach
84
heart
71
brain
67
lung
66
muscle of arm
64
HeLa-S3
64
kidney
63
small intestine
62
A549
61
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
thymus
46
H1-hESC
45
liver
45
right lung
44
CD8-positive, alpha-beta T cell
44
neural progenitor cell
42
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
39
B cell
39
renal cortex interstitium
39
renal pelvis
36
left kidney
35
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
spleen
30
heart left ventricle
29
islet of Langerhans
28
adipose tissue
26
MCF-7
26
adipocyte
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
hepatocyte
22
macrophage
22
retina
21
endothelial cell
21
natural killer cell
20
breast cancer cell
20
fibroblast
20
mononuclear cell
20
psoas muscle
19
foreskin fibroblast
19
keratinocyte
19
ovary
18
HFFc6
18
body of pancreas
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreas
18
smooth muscle cell
18
thyroid gland
18
transverse colon
17
T cell
17
embryonic stem cell
17
muscle of trunk
17
regulatory T cell
17
tibial nerve
16
GM12878
16
HepG2
16
chorionic villus
16
fibroblast of lung
16
heart right ventricle
16
layer of hippocampus
16
testis
16
upper lobe of left lung
15
H9
15
caudate nucleus
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
CD4-positive, alpha-beta T cell
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
prostate gland
13
EndoC_BH1
13
Peyer's patch
13
bronchial epithelial cell
13
neurosphere
12
T-helper 1 cell
12
T-helper 17 cell
12
aorta
12
fibroblast of dermis
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
neuronal stem cell
12
osteoblast
11
T-helper 2 cell
11
breast epithelium
11
coronary artery
11
epithelial cell of prostate
11
pericyte cell
11
retinal pigment epithelial cell
11
substantia nigra
11
temporal lobe
11
tibial artery
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left renal cortex interstitium
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
right atrium auricular region
10
right renal cortex interstitium
10
trophoblast
9
HEK293
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
9
thoracic aorta
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
HT-29
8
IMR-90
8
NAMALWA cell
8
cerebellum
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
omental fat pad
8
pancreatic ductal cell
8
pituitary stalk
8
putamen
8
subcutaneous adipose tissue
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
Caco-2 cell
7
GM19240
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
ascending aorta
7
astrocyte
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
frontal cortex
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
mature neutrophil
7
stomach smooth muscle
7
uterus
6
Ammon's horn
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
Life stage
4
unknown
Date released
3
September, 2022
2
February, 2021
2
November, 2021
1
May, 2021
Software used
3
abc
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
6
AMP
2
ENCODE
RFA
6
AMP
2
ENCODE3
biosample_term_name!
lymphoblastoid cell line
files.file_type!
bigWig
tsv
Showing 8 of 8 results
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Download
FileSet
DSR223CRF
released
Annotation file set
: Candidate regulatory elements for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR903FVP
released
Annotation file set
: Target gene predictions for BSS00089 astrocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR424EJT
released
Annotation file set
: Chromatin states for BSS00089 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR571UAN
released
Annotation file set
: Target gene predictions of Astrocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR563FTC
released
Annotation file set
: Target gene predictions of Astrocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR488ZSW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR720CZQ
released
Annotation file set
: Histone modifications annotation for Neural Astrocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR031ZTG
released
Annotation file set
: enhancer-gene predicton of astrocyte-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP