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Citing CMDGA
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Annotation type
2
gene expression
1
differential activity
1
eQTL
1
target gene predictions
Annotation Category
3
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
RNA-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
tsv
1
bed bed3+
File set status
5
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
63
small intestine
32
adipose tissue
21
subcutaneous adipose tissue
18
omental fat pad
9
duodenal mucosa
8
muscle layer of duodenum
6
subcutaneous abdominal adipose tissue
4
visceral abdominal adipose tissue
1
omental fat pad
1
beige adipocyte
1
white adipose tissue
Disease term
1
coronary artery disease
Organ
5
adipose tissue
5
connective tissue
0
small intestine
Life stage
3
adult
Date released
2
February, 2021
1
February, 2024
1
January, 2022
1
May, 2021
Software used
2
r
1
abc
1
deseq2
1
qTLtools
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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FileSet
DSR483AIN
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for visceral abdominal adipose tissue (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631EVX
released
Annotation file set
: adipose visceral eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR825KTA
released
Annotation file set
: Gene expression TPM of developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [RNA_seq_Whole]
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR477UYX
released
Annotation file set
: Gene expression TPM of developmental origins define epigenomic differences between subcutaneous and visceral adipocytes of GSE110821 [RNA-Seq]
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR405NVR
released
Annotation file set
: enhancer-gene predicton of brite_adipose-Loft2014 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP