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Schema
Citing CMDGA
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Annotation type
4
chromatin state
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
1
DNase-seq
Available data
bed bed3+
4
bed bed9
2
bigBed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
9
coronary artery
9
tibial artery
8
ascending aorta
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Glomerular Capillary Endothelial Cell
5
Lymphatic Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
endothelial cell of umbilical vein
4
endothelial cell of hepatic sinusoid
4
pancreatic endothelial cell
3
thoracic aorta
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
kidney capillary endothelial cell
2
smooth muscle cell of the coronary artery
2
vascular associated smooth muscle cell
1
abdominal aorta artery
1
aorta wall
1
endothelial cell of coronary artery
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
lung microvascular endothelial cell
1
pulmonary artery endothelial cell
1
smooth muscle cell of the brain vasculature
1
whole blood
Organ
brain
5
blood vessel
5
epithelium
5
vasculature
5
vein
Life stage
3
newborn
Date released
2
January, 2020
2
September, 2022
1
May, 2020
Software used
4
chromhmm
1
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed3+
organ_slims!
brain
Showing 5 of 5 results
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FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088CRI
released
Annotation file set
: Variant allelic effects of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP