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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
gene expression
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
DNase-seq
Available data
2
bed bed9
2
bigBed bed9
2
tsv
1
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
4
brain
4
heart
4
nephron progenitor
3
S-shaped body
3
kidney
3
kidney interstitial cell
2
endothelial cell of hepatic sinusoid
2
mesangial cell
2
renal vesicle
1
cardiac fibroblast
1
hindlimb muscle
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cerebellum
1
diencephalon
1
endothelial cell
1
epithelial cell of distal tubule
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart left ventricle
1
heart right ventricle
1
hepatoblast
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
leukocyte
1
liver
1
meso-epithelial cell
1
metanephros
1
muscle of arm
1
muscle of leg
1
occipital lobe
1
parietal lobe
1
pericardium fibroblast
1
proximal tubule
1
renal connecting tubule
1
renal cortex interstitium
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle tissue
1
temporal lobe
1
ureteric bud
Organ
4
brain
1
musculature of body
Life stage
61
embryonic
9
adult
5
fetal
5
unknown
Date released
2
February, 2020
2
January, 2020
1
November, 2019
Software used
2
chromhmm
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
spleen
organ_slims!
bronchus
Showing 5 of 5 results
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Download
FileSet
DSR332ASC
released
Annotation file set
: Gene expression levels of skeletal muscle from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR267EUN
released
Annotation file set
: Gene expression levels of Brain fetal from RNA-seq (GSE63634)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833MWK
released
Annotation file set
: ChromHMM 15-state model for fetal brain male from ENCODE ChIP-seq data. ROADMAP fetal brain male
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073PLY
released
Annotation file set
: ChromHMM 15-state model for fetal brain female from ENCODE ChIP-seq data. ROADMAP fetal brain female
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP