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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
1
binding sites
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Target gene links
Annotation type Category
3
DNase-seq
2
ATAC-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
6
bed bed3+
2
bigWig
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
Biosample term
113
monocyte
56
HeLa-S3
42
H1-hESC
41
CD8-positive, alpha-beta T cell
29
fibroblast
29
heart
29
islet of Langerhans
29
neural progenitor cell
28
endothelial cell
28
kidney
28
macrophage
28
retina
26
K562
25
stomach
24
liver
23
brain
22
hepatocyte
21
A549
20
pericyte cell
20
pigmented layer of retina
20
smooth muscle cell
19
B cell
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
small intestine
18
lung
18
muscle of arm
18
muscle of leg
17
adipocyte
17
placenta
16
endothelial cell of hepatic sinusoid
16
heart left ventricle
15
T cell
15
adipose tissue
15
coronary artery
15
large intestine
14
common myeloid progenitor, CD34-positive
14
thymus
14
tibial nerve
13
EndoC_BH1
13
excitatory neuron
13
left lung
13
muscle of back
13
pancreas
13
subcutaneous adipose tissue
12
astrocyte
12
caudate nucleus
12
embryonic stem cell
12
pancreatic ductal cell
12
tibial artery
11
GM12878
11
HepG2
11
endothelial cell of umbilical vein
11
erythroblast
11
hematopoietic multipotent progenitor cell
11
pancreatic acinar cell
11
pancreatic beta cell
11
renal pelvis
11
right atrium auricular region
11
right lung
11
spinal cord
11
spleen
10
body of pancreas
10
frontal cortex
10
mesenchymal stem cell
10
natural killer cell
10
retinal pigment epithelial cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
ascending aorta
9
heart right ventricle
9
keratinocyte
9
left kidney
9
neutrophil
9
pancreatic delta cell
9
pituitary stalk
9
putamen
9
regulatory T cell
9
renal cortex interstitium
8
Ammon's horn
8
H9
8
MCF-7
8
cerebellum
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
induced pluripotent stem cell
8
left cardiac atrium
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
omental fat pad
8
ovary
8
skeletal muscle satellite cell
8
substantia nigra
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
T-helper 1 cell
7
cardiac muscle cell
7
colon epithelial cell
7
fibroblast of lung
7
lymphoblastoid cell line
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
pancreatic alpha cell
7
psoas muscle
7
skeletal muscle myoblast
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
foreskin fibroblast
6
gastrocnemius medialis
6
iPSC derived cell line
6
memory B cell
6
mononuclear cell
6
osteoblast
6
thyroid gland
6
trophoblast cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
HUES8
5
alternatively activated macrophage
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
choroid plexus epithelial cell
5
fibroblast of dermis
5
foreskin keratinocyte
5
gabaergic neuron
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
hypothalamus
5
inhibitory neuron
5
layer of hippocampus
5
luminal epithelial cell of mammary gland
5
muscle of trunk
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
nucleus accumbens
5
olfactory receptor cell
5
pancreatic stellate cell
5
skeletal muscle fiber
5
transverse colon
5
type I muscle cell
4
C1 segment of cervical spinal cord
4
CyT49
4
GM19240
4
IMR-90
4
KARPAS-422 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Peyer's patch
4
SK-N-SH
4
activated CD4-positive, alpha-beta T cell
4
angular gyrus
4
blood vessel smooth muscle cell
4
breast epithelium
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
chorion membrane
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
epithelial cell of proximal tubule
4
esophagus
4
esophagus muscularis mucosa
4
gastrocnemius medialis(Muscle - Skeletal)
4
globus pallidus
4
glomerular endothelial cell
4
inflammatory macrophage
4
kidney glomerular epithelial cell
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
left ventricle myocardium
4
mammary epithelial cell
4
medulla oblongata
4
megakaryocyte
4
mesendoderm
4
mesothelial cell
4
midbrain
4
myofibroblast cell
4
naive B cell
4
pancreatic A cell
4
right lobe of liver
4
sigmoid colon
4
skin fibroblast
4
trophoblast
4
type II muscle cell
4
upper lobe of left lung
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
Life stage
1
embryonic
Date released
February, 2021
2
January, 2020
1
February, 2024
1
May, 2020
1
May, 2021
1
October, 2022
1
September, 2022
Software used
2
chromhmm
2
deltasvm
2
macs
r
1
abc
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
neurosphere
month_released!
February, 2021
software_used.software.name!
r
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR073XYT
released
Annotation file set
: Binding sites annotation for cardiac muscle cell (HCM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR313BZF
released
Annotation file set
: Chromatin states for BSS00171 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR130JFC
released
Annotation file set
: enhancer-gene predicton of cardiac_muscle_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433FIX
released
Annotation file set
: Accessible chromatin annotation of heart cardiac muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433PLX
released
Annotation file set
: Cardiomyocytes (cardiac muscle cell) accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP