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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
variant allelic effects
1
binding sites
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
snATAC-seq
Available data
6
bed bed3+
1
tsv
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
20
in vitro differentiated cells
7
cell line
7
primary cell
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
43
B cell
42
endothelial cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
31
macrophage
28
regulatory T cell
24
natural killer cell
24
pericyte cell
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
epithelial cell of proximal tubule
22
smooth muscle cell
21
T-helper 17 cell
20
glomerular endothelial cell
20
mononuclear cell
19
foreskin keratinocyte
19
pancreatic ductal cell
18
endothelial cell of umbilical vein
18
pancreatic beta cell
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
osteoblast
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic acinar cell
16
pancreatic delta cell
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
erythroblast
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
9
epithelial cell of prostate
9
hepatic stellate cell
9
kidney tubule cell
9
mast cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
7
CD1c-positive myeloid dendritic cell
7
endothelial cell of lymphatic vessel
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
adipocyte
6
alternatively activated macrophage
6
cardiac muscle cell
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney epithelial cell
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
Life stage
2
unknown
Date released
2
February, 2021
2
May, 2021
1
February, 2024
January, 2020
1
May, 2020
1
October, 2022
Software used
2
deltasvm
2
encode-ccres
1
abc
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
January, 2020
November, 2019
Showing 7 of 7 results
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Download
FileSet
DSR073XYT
released
Annotation file set
: Binding sites annotation for cardiac muscle cell (HCM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR732JRY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR009TSB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cardiac muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR130JFC
released
Annotation file set
: enhancer-gene predicton of cardiac_muscle_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR731EZG
released
Annotation file set
: Variant allelic effects annotation of Cardiomyocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP