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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
gene expression
1
histone modifications
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
27
kidney
23
heart
22
stomach
20
breast cancer cell
19
brain
18
muscle of arm
17
lung
16
epithelial cell of proximal tubule
15
muscle of back
15
placenta
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
glomerular endothelial cell
14
large intestine
14
muscle of leg
14
small intestine
13
left lung
12
neuroblastoma cell
11
cardiac muscle cell
11
cardiomyocytes
11
gastric cancer cell
11
hematopoietic multipotent progenitor cell
11
renal cortex interstitium
11
renal pelvis
10
diffuse intrinsic pontine glioma
10
right lung
10
thymus
9
Rhabdomyosarcoma
9
foreskin keratinocyte
9
heart left ventricle
9
islet of Langerhans
9
liposarcoma
9
mammary epithelial cell
8
CD4-positive, alpha-beta T cell
8
MCF-7
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
foreskin fibroblast
8
induced pluripotent stem cell
8
liver
8
neuronal stem cell
8
right kidney
8
spleen
7
B cell
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta T cell
7
endothelial cell
7
endothelial cell of umbilical vein
7
fibroblast cell line
7
hESC cell
7
keratinocyte
7
spinal cord
6
Chondroid Chordoma
6
H9
6
acute myeloid leukemia
6
adipose tissue
6
bronchial epithelial cell
6
glomerular visceral epithelial cell
6
hepatocyte
6
left kidney
6
neuroblastoma cell line
6
pancreas
5
A549
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
adipocyte
5
body of pancreas
5
caudate nucleus
5
embryonic stem cell
5
esophageal squamous cell carcinoma
5
foreskin melanocyte
5
glioblastoma multiforme cancer stem cell
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
natural killer cell
5
neural progenitor cell
5
osteoblast
5
osteosarcoma
5
prostate cancer cell line
5
subcutaneous adipose tissue
5
testis
4
22Rv1
4
CD14-positive monocyte
4
HEK293
4
HS-SY-2 cell
4
HepG2
4
Jurkat
4
LNCAP
4
Mantle cell lymphoma
4
Peyer's patch
4
RS4-11 cell
4
Rh-4 cell
4
T-cell
4
Th1 cell
4
Tumor-derived cell line
4
WI38
4
aorta
4
ascending aorta
4
bone tissue
4
chorionic villus
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
dermal fibroblast
4
diffuse large B-cell lymphoma
4
erythroid progenitor cell
4
esophagus squamous epithelium
4
gastroesophageal sphincter
4
glioblastoma cell
4
glioma cell
4
hepatic stellate cell
4
immortal neural cell line cell
4
left renal pelvis
4
nephron progenitor
4
right renal pelvis
4
sigmoid colon
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
COLO205
3
GM06990
3
GM12864
3
GM12865
3
GM12873
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
IMR-90
3
Ishikawa
3
K562
3
LHCN-M2
3
MCF 10A
3
MG63
3
MM.1S
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RKO
3
RPMI8226
3
RWPE1
3
S-shaped body
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
T-helper 1 cell
3
WERI-Rb-1
3
adult endothelial progenitor cell
breast epithelium
3
cardiac fibroblast
3
cardiac precursors (cardiac muscle cell)
3
cerebellum
3
chronic lymphocytic leukemia cell
3
coronary artery
3
dermis blood vessel endothelial cell
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
endodermal cell
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
fibroblast
3
fibroblast of lung
3
fibroblast of mammary gland
3
gastrocnemius medialis
3
globus pallidus
3
heart right ventricle
3
hematopoietic cell
3
kidney cortex collecting duct intercalated cell
3
kidney cortex collecting duct principal cell
3
leukemic stem cell
3
lower leg skin
3
lymphoblastoid cell line
3
melanoma
3
trophoblast cell
2
143B
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AGS cell
Organ
5
brain
Life stage
4
adult
Date released
9
September, 2022
3
February, 2021
3
March, 2020
2
January, 2020
1
August, 2017
1
February, 2020
1
January, 2022
1
June, 2020
1
May, 2020
Software used
2
encode-ccres
2
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
breast epithelium
month_released!
October, 2022
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR283BCL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE caudate nucleus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264OSM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE caudate nucleus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR837TEV
released
Annotation file set
: Histone modifications annotation for Neural Caudate_Nucleus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR253KNV
released
Annotation file set
: Gene expression summary of TPM of brain caudate basal ganglia from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR775JNR
released
Annotation file set
: Accessible chromatin annotation of brain caudate nucleus from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP