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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
22
heart
22
stomach
20
breast cancer cell
20
kidney
19
brain
18
muscle of arm
17
lung
15
large intestine
15
muscle of back
15
placenta
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
muscle of leg
14
small intestine
13
left lung
12
neuroblastoma cell
11
cardiac muscle cell
11
gastric cancer cell
11
hematopoietic multipotent progenitor cell
11
renal cortex interstitium
11
renal pelvis
10
diffuse intrinsic pontine glioma
10
right lung
10
thymus
9
Rhabdomyosarcoma
9
foreskin keratinocyte
9
heart left ventricle
9
left kidney
9
liposarcoma
9
liver
9
mammary epithelial cell
8
CD4-positive, alpha-beta T cell
8
MCF-7
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
foreskin fibroblast
8
keratinocyte
8
neuronal stem cell
8
right kidney
8
spleen
7
B cell
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta T cell
7
endothelial cell of umbilical vein
7
fibroblast cell line
7
hESC cell
7
spinal cord
6
Chondroid Chordoma
6
H9
6
acute myeloid leukemia
6
bronchial epithelial cell
6
neuroblastoma cell line
6
pancreas
5
A549
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
esophageal squamous cell carcinoma
5
foreskin melanocyte
5
glioblastoma multiforme cancer stem cell
5
left renal pelvis
5
natural killer cell
5
neural progenitor cell
5
osteosarcoma
5
prostate cancer cell line
5
testis
4
22Rv1
4
CD14-positive monocyte
4
HEK293
4
HS-SY-2 cell
4
HepG2
4
Jurkat
4
LNCAP
4
Mantle cell lymphoma
4
Peyer's patch
4
RS4-11 cell
4
Rh-4 cell
4
T-cell
4
Th1 cell
4
Tumor-derived cell line
4
WI38
4
adipocyte
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
choroid plexus epithelial cell
4
colon adenocarcinoma
4
dermal fibroblast
4
dermis blood vessel endothelial cell
4
endodermal cell
4
erythroid progenitor cell
4
esophagus squamous epithelium
4
gastroesophageal sphincter
4
glioblastoma cell
4
glioma cell
4
hepatic stellate cell
4
immortal neural cell line cell
4
islet of Langerhans
4
layer of hippocampus
4
lower leg skin
4
lymphoblastoid cell line
4
melanoma
4
osteoblast
4
right renal pelvis
4
sigmoid colon
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
cardiac fibroblast
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
COLO205
3
GM06990
3
GM12864
3
GM12865
3
GM12873
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
IMR-90
3
Ishikawa
3
K562
3
LHCN-M2
3
MCF 10A
3
MG63
3
MM.1S
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RKO
3
RPMI8226
3
RWPE1
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
T-helper 1 cell
3
WERI-Rb-1
3
adipose tissue
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
cerebellum
3
chronic lymphocytic leukemia cell
3
colonic mucosa
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
endothelial cell
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
fibroblast
3
fibroblast of lung
3
fibroblast of mammary gland
3
gastrocnemius medialis
3
globus pallidus
3
heart right ventricle
3
hematopoietic cell
3
hepatocyte
3
left renal cortex interstitium
3
leukemic stem cell
3
lung fibroblast cell line
3
lymphoblast
3
mesenchymal stem cell
3
mesodermal cell
3
trophoblast cell
2
143B
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AGS cell
2
ALL-SIL cell
2
Adipose stromal cell
2
Ammon's horn
2
AsPC-1 cell
2
B-cell lymphoma cell
2
BCBL-1 cell
2
BE(2)-C
2
BEAS-2B cell
2
BG03
2
BICR 31
Organ
4
brain
Life stage
3
adult
Date released
3
February, 2021
3
March, 2020
3
September, 2022
1
August, 2017
1
February, 2020
1
January, 2020
1
January, 2022
1
June, 2020
1
May, 2020
Software used
2
encode-ccres
2
macs
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
October, 2022
software_used.software.name!
r
Showing 4 of 4 results
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Download
FileSet
DSR283BCL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE caudate nucleus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264OSM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE caudate nucleus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR837TEV
released
Annotation file set
: Histone modifications annotation for Neural Caudate_Nucleus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR775JNR
released
Annotation file set
: Accessible chromatin annotation of brain caudate nucleus from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP