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Assay category
2
DNA binding
1
DNA accessibility
Assay
2
ChIP-seq
1
DNase-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Biosample type
3
primary cell
Organ
3
brain
3
epithelium
3
vasculature
Life stage
3
unknown
Available data
4
bam
4
bigWig
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
fastq
1
bed bed3+
bed bedMethyl
1
bigBed bedMethyl
Platform
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
Run type
2
single-ended
Read length (nt)
2
36
Library made from
3
DNA
Date released
2
November, 2017
1
June, 2019
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
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bed bedMethyl
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Experiment
DSR926WTD
released
DNase-seq
of choroid plexus epithelial cell
Homo sapiens
choroid plexus epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR545778
released
ChIP-seq
of choroid plexus epithelial cell
Homo sapiens
choroid plexus epithelial cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR411985
released
ChIP-seq
of choroid plexus epithelial cell
Homo sapiens
choroid plexus epithelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP