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Citing CMDGA
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Annotation type
1
target gene predictions
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
snATAC-seq
Available data
46
bed bed3+
13
bed bed9
5
tsv
2
bigBed narrowPeak
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
5
hepatocyte
4
endothelial cell of hepatic sinusoid
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
islet of Langerhans
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
regulatory T cell
1
T cell
1
basal cell
1
ciliated cell
1
club cell
1
coronary artery
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
erythrocyte
1
immature natural killer cell
1
kidney
1
left renal cortex interstitium
1
macrophage
1
medulla oblongata
1
midbrain
1
myeloid dendritic cell
1
myofibroblast cell
1
naive regulatory T cell
1
neuroendocrine cell
1
pancreatic polypeptide-secreting cell
1
pericyte cell
1
plasma cell
1
plasmacytoid dendritic cell
1
right kidney
1
right renal cortex interstitium
1
skeletal muscle myoblast
1
type I pneumocyte
1
type II pneumocyte
Organ
2
epithelium
2
pancreas
Life stage
2
adult
Date released
1
February, 2024
1
September, 2022
Software used
macs
1
cicero
1
deltasvm
Lab
2
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
biosample_type!
cell line
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP