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Annotation type
1
candidate regulatory elements
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
scRNA-seq
1
snATAC-seq
Available data
1
bed bed3+
1
tsv
1
txt
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
2636
whole blood
130
monocyte
90
heart
84
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
H1-hESC
53
common myeloid progenitor, CD34-positive
53
liver
52
left lung
51
neural progenitor cell
48
CD8-positive, alpha-beta T cell
47
thymus
46
B cell
45
islet of Langerhans
45
right lung
43
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
38
endothelial cell
36
hepatocyte
36
left kidney
36
macrophage
34
heart left ventricle
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
30
adipose tissue
30
fibroblast
28
regulatory T cell
26
subcutaneous adipose tissue
25
MCF-7
25
adipocyte
25
natural killer cell
25
tibial nerve
23
EndoC_BH1
23
T-helper 1 cell
23
body of pancreas
23
epithelial cell of proximal tubule
23
pancreatic ductal cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
foreskin keratinocyte
22
sigmoid colon
21
T-helper 17 cell
21
glomerular endothelial cell
21
pancreas
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
20
smooth muscle cell
20
trophoblast cell
19
coronary artery
19
heart right ventricle
19
ovary
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
keratinocyte
18
mesenchymal stem cell
18
pancreatic beta cell
18
substantia nigra
18
tibial artery
17
T-helper 2 cell
17
gastrocnemius medialis
17
omental fat pad
17
pancreatic alpha cell
17
testis
17
thyroid gland
17
transverse colon
16
HepG2
16
cardiac muscle cell
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
layer of hippocampus
16
muscle of trunk
16
osteoblast
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD14-positive monocyte
15
ascending aorta
15
cerebellum
15
fibroblast of cardiac tissue
15
fibroblast of lung
15
frontal cortex
15
induced pluripotent stem cell
15
neutrophil
15
pancreatic acinar cell
15
pericyte cell
15
skeletal muscle myoblast
14
GM12878
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic delta cell
14
prostate gland
14
putamen
13
CD4-positive, alpha-beta T cell
13
H9
13
Peyer's patch
13
aorta
13
astrocyte
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
skeletal muscle satellite cell
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
neuronal stem cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
NAMALWA cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle fiber
8
skin fibroblast
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
IMR-90
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
Life stage
2
adult
Date released
1
August, 2021
1
May, 2024
Software used
abc
1
r
1
seurat
Lab
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
2
AMP
Collection Tags
1
DGA
1
FNIH_projects-liver
RFA
2
AMP2
software_used.software.name!
abc
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR943ZAG
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of dendritic cell derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR832FZL
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for dendritic cell
Lab:
Katalin Susztak, Upenn
Project:
AMP