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Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
chromatin state
1
eQTL
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ChIP-seq
1
RNA-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
5
adipocyte
3
endothelial cell
3
mesenchymal stem cell
3
smooth muscle cell
3
type I muscle cell
3
type II muscle cell
2
ESC derived cell line
2
skeletal muscle fiber
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
glial cell
1
islet of Langerhans
1
keratinocyte
1
layer of hippocampus
1
leukocyte
1
liver
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
neural cell
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
3
epithelium
1
intestine
1
small intestine
Date released
2
February, 2024
1
August, 2017
1
October, 2022
Software used
1
chromhmm
1
eigenmt
1
macs
1
qTLtools
1
rasqual
Lab
19
Bing Ren, UCSD
11
AMP-T2D consortium
4
Stephen Parker, UMich
3
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
Project
4
AMP
RFA
3
AMP2
1
AMP
biosample_term_name!
GM12865
Showing 4 of 4 results
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FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR459407
released
Annotation file set
: ChromHMM 13-state model for duodenum mucosa
Lab:
Stephen Parker, UMich
Project:
AMP