Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
accessible chromatin
Annotation Category
3
Gene expression levels
2
cis-regulatory elements
Annotation type Category
3
RNA-seq
2
ATAC-seq
Available data
3
tsv
2
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
5
primary cell
Biosample term
128
monocyte
53
common myeloid progenitor, CD34-positive
43
CD8-positive, alpha-beta T cell
35
B cell
32
CD4-positive, alpha-beta memory T cell
26
regulatory T cell
23
T-helper 1 cell
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
20
T-helper 17 cell
20
glomerular endothelial cell
20
mononuclear cell
19
foreskin keratinocyte
19
hepatocyte
18
endothelial cell of umbilical vein
17
T-helper 2 cell
17
trophoblast cell
16
CD14-positive monocyte
16
natural killer cell
16
osteoblast
15
foreskin fibroblast
15
neutrophil
15
skeletal muscle myoblast
14
T cell
14
fibroblast of lung
13
CD4-positive, alpha-beta T cell
13
neurosphere
12
bronchial epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
11
fibroblast of dermis
11
mammary epithelial cell
10
dermis blood vessel endothelial cell
10
endothelial cell
10
glomerular visceral epithelial cell
10
keratinocyte
10
kidney tubule cell
10
macrophage
10
mammary gland epithelial cell
9
fibroblast of cardiac tissue
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
8
epithelial cell of prostate
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
hepatic stellate cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
renal cortical epithelial cell
7
CD1c-positive myeloid dendritic cell
7
astrocyte
7
choroid plexus epithelial cell
7
kidney epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
pancreatic ductal cell
7
pulmonary artery endothelial cell
7
skeletal muscle satellite cell
7
skin fibroblast
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
dermis lymphatic vessel endothelial cell
6
foreskin melanocyte
6
gamma-delta T cell
6
kidney interstitial cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
T follicular helper cell
5
alternatively activated macrophage
5
brain microvascular endothelial cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
erythroblast
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
memory B cell
5
mesangial cell
5
non-pigmented ciliary epithelial cell
5
pancreatic beta cell
5
tracheal epithelial cell
4
T-cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
glutamatergic neuron
4
inflammatory macrophage
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
pancreatic alpha cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
3
Ishikawa
3
S-shaped body
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
fibroblast
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
luminal epithelial cell of mammary gland
3
mammary stem cell
3
mast cell
3
mesenchymal stem cell
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
pericyte cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
erythroid progenitor cell
2
head and neck squamous cell carcinoma
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
myeloid dendritic cell
2
neuronal stem cell
2
pancreatic polypeptide-secreting cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
renal vesicle
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
somatic muscle myotube
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B-1a B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Schwann cell
1
Stromal Predominant Kidney Wilms Tumor
Date released
2
May, 2020
2
May, 2021
1
February, 2024
Software used
3
r
Lab
5
AMP-T2D consortium
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR814BPK
released
Annotation file set
: Gene expression annotation for BLUEPRINT study of ncRNA-seq of EBI:E-MTAB-2319 for CD8 Effector Memory(CD8+ CCR7- CD45RA- CD45RO+)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR872YFY
released
Annotation file set
: GSE118165 gene expression annotation of normal effector memory CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR934FAY
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated effector memory CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR405YAY
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal effector memory CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR836FSD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated effector memory CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP