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Schema
Citing CMDGA
Clear Filters
Annotation type
1
gene expression
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
Annotation type Category
1
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
41
heart
39
stomach
36
A549
35
kidney
34
lung
33
brain
32
muscle of arm
31
small intestine
30
adrenal gland
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
26
muscle of leg
23
thymus
22
right lung
21
hematopoietic multipotent progenitor cell
20
right kidney
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
epithelial cell of proximal tubule
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
16
adipose tissue
16
glomerular endothelial cell
16
neural progenitor cell
15
monocyte
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
14
spleen
13
T-helper 1 cell
13
T-helper 17 cell
13
islet of Langerhans
13
regulatory T cell
12
K562
12
heart left ventricle
12
hepatocyte
12
mononuclear cell
11
cardiomyocytes
11
sigmoid colon
10
H1-hESC
10
MCF-7
10
body of pancreas
10
endothelial cell
10
ovary
10
trophoblast cell
9
T-helper 2 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
psoas muscle
8
CD14-positive monocyte
8
EndoC_BH1
8
T cell
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
gastrocnemius medialis
8
heart right ventricle
8
muscle of trunk
8
natural killer cell
8
thyroid gland
8
tibial nerve
8
transverse colon
7
caudate nucleus
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
retina
7
skeletal muscle tissue
7
testis
6
HeLa-S3
6
Peyer's patch
6
adipocyte
6
aorta
6
cerebellum
6
chorion membrane
6
endometrium adenocarcinoma
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
layer of hippocampus
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
omental fat pad
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
right atrium auricular region
6
upper lobe of left lung
5
ascending aorta
5
coronary artery
5
esophagus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
kidney tubule cell
5
mesangial cell
5
pancreas
5
pancreatic stellate cell
5
skeletal muscle myoblast
5
subcutaneous adipose tissue
5
substantia nigra
5
temporal lobe
5
tibial artery
5
trophoblast
5
vagina
4
22Rv1
4
Ammon's horn
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
angular gyrus
4
bone tissue
4
breast epithelium
4
bronchial epithelial cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
gamma-delta T cell
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
neutrophil
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
parathyroid adenoma
4
prostate gland
4
right cardiac atrium
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
skin fibroblast
4
smooth muscle cell
4
stomach smooth muscle
4
thoracic aorta
4
tongue
4
urinary bladder
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
CD8-positive, alpha-beta T cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
Date released
1
March, 2020
1
May, 2021
Software used
11
macs
5
chromhmm
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
HepG2
Showing 2 of 2 results
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Download
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP