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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
6
ATAC-seq
1
RNA-seq
1
pCHi-C
Available data
6
bed bed3+
bed bed9
5
bigBed bed9
1
tsv
File set status
8
released
Genome assembly (visualization)
6
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
128
monocyte
59
HeLa-S3
51
H1-hESC
48
heart
45
stomach
44
CD8-positive, alpha-beta T cell
40
kidney
40
neural progenitor cell
39
A549
38
brain
37
endothelial cell
36
islet of Langerhans
35
lung
34
adrenal gland
34
muscle of arm
34
small intestine
33
liver
33
macrophage
32
B cell
32
K562
32
fibroblast
32
retina
31
placenta
30
hepatocyte
29
muscle of leg
28
large intestine
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
26
thymus
25
smooth muscle cell
23
CD14-positive monocyte
23
pericyte cell
23
right lung
22
adipocyte
22
hematopoietic multipotent progenitor cell
22
right kidney
21
EndoC_BH1
21
adipose tissue
21
pancreatic ductal cell
21
renal pelvis
20
pigmented layer of retina
20
regulatory T cell
20
renal cortex interstitium
19
HFFc6
19
T cell
19
heart left ventricle
19
spinal cord
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
spleen
17
T-helper 1 cell
17
pancreatic beta cell
17
tibial nerve
16
T-helper 17 cell
16
body of pancreas
16
caudate nucleus
16
coronary artery
16
endothelial cell of hepatic sinusoid
16
natural killer cell
16
right atrium auricular region
15
pancreatic acinar cell
15
pancreatic delta cell
15
subcutaneous adipose tissue
14
CD8-positive, alpha-beta memory T cell
14
astrocyte
14
pancreas
14
pancreatic alpha cell
14
tibial artery
13
MCF-7
13
excitatory neuron
13
frontal cortex
13
sigmoid colon
12
GM12878
12
HepG2
12
T-helper 2 cell
12
cerebellum
12
ovary
12
trophoblast cell
11
erythroblast
11
mesenchymal stem cell
mononuclear cell
11
neutrophil
11
omental fat pad
11
psoas muscle
11
retinal pigment epithelial cell
11
thyroid gland
10
Ammon's horn
10
ascending aorta
10
endothelial cell of umbilical vein
10
fibroblast of cardiac tissue
10
pancreatic stellate cell
10
putamen
10
skeletal muscle myoblast
10
substantia nigra
10
transverse colon
9
H9
9
gastrocnemius medialis
9
heart right ventricle
9
keratinocyte
9
skeletal muscle satellite cell
8
cardiac muscle cell
8
chorionic villus
8
colon epithelial cell
8
endocrine pancreas
8
extended pluripotent stem (EPS) cells
8
fibroblast of dermis
8
fibroblast of lung
8
foreskin fibroblast
8
left cardiac atrium
8
mammary gland epithelial cell
8
muscle of trunk
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
skin fibroblast
8
testis
7
CD4-positive, alpha-beta T cell
7
Peyer's patch
7
aorta
7
chorion membrane
7
foreskin keratinocyte
7
lymphoblastoid cell line
7
lymphocyte
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
osteoblast
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
SK-N-SH
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
esophagus
6
glomerular endothelial cell
6
hepatic stellate cell
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
kidney tubule cell
6
layer of hippocampus
6
mast cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
skeletal muscle tissue
6
trophoblast
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
KARPAS-422 cell
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
NAMALWA cell
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
Date released
6
May, 2021
February, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
1
r
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
mononuclear cell
files.file_type!
bed bed9
month_released!
February, 2021
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP