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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
binding sites
2
histone modifications
1
accessible chromatin
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
1
ATAC-seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
cell line
Biosample term
69
heart
65
kidney
65
stomach
59
HeLa-S3
55
brain
52
lung
51
muscle of arm
50
H1-hESC
47
neural progenitor cell
47
small intestine
45
placenta
42
A549
42
large intestine
42
muscle of leg
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
endothelial cell
39
islet of Langerhans
39
left lung
39
liver
37
retina
36
thymus
34
hepatocyte
34
right lung
33
B cell
32
K562
32
hematopoietic multipotent progenitor cell
32
right kidney
31
fibroblast
31
renal cortex interstitium
31
renal pelvis
30
macrophage
27
left kidney
26
heart left ventricle
26
spinal cord
26
spleen
24
adipose tissue
23
CD4-positive, alpha-beta memory T cell
23
pancreatic ductal cell
23
regulatory T cell
23
smooth muscle cell
21
epithelial cell of proximal tubule
21
pericyte cell
21
tibial nerve
20
breast cancer cell
20
glomerular endothelial cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
MCF-7
19
body of pancreas
19
natural killer cell
18
HFFc6
18
T cell
18
foreskin keratinocyte
17
caudate nucleus
17
pancreas
17
pancreatic beta cell
17
right atrium auricular region
16
CD8-positive, alpha-beta T cell
16
T-helper 1 cell
16
T-helper 17 cell
16
adipocyte
16
coronary artery
16
endothelial cell of hepatic sinusoid
16
keratinocyte
16
ovary
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
induced pluripotent stem cell
15
omental fat pad
15
pancreatic alpha cell
pancreatic delta cell
15
substantia nigra
14
cardiac muscle cell
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic acinar cell
14
psoas muscle
14
retinal pigment epithelial cell
14
testis
14
tibial artery
14
transverse colon
13
HepG2
13
excitatory neuron
13
fibroblast of cardiac tissue
13
foreskin fibroblast
13
frontal cortex
13
gastrocnemius medialis
13
heart right ventricle
13
osteoblast
13
putamen
13
skeletal muscle tissue
13
thyroid gland
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
H9
12
ascending aorta
12
cerebellum
12
endothelial cell of umbilical vein
12
layer of hippocampus
12
lymphoblastoid cell line
12
monocyte
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
GM12878
11
T-helper 2 cell
11
chorionic villus
11
mammary gland epithelial cell
11
muscle of trunk
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
mammary epithelial cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neuronal stem cell
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
epithelial cell of prostate
8
esophagus
8
fibroblast cell line
8
hepatic stellate cell
8
neutrophil
8
skeletal muscle fiber
8
trophoblast
7
amygdala
7
breast epithelium
7
cardiomyocytes (cardiac muscle cell)
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast of lung
7
kidney tubule cell
7
lower leg skin
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
temporal lobe
7
thoracic aorta
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
6
GM12865
6
HT-29
6
HUES8
6
NAMALWA cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of dermis
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
memory B cell
6
mesendoderm
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
Date released
May, 2021
5
February, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
pancreatic delta cell
month_released!
May, 2021
organ_slims!
adrenal gland
software_used.software.name!
chromhmm
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR927IPU
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Expanded_potential_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR134CON
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161DPJ
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell KhES-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084KAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_VAL-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR026FET
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell Embryonic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP