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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
pCHi-C
Available data
1
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
69
heart
62
stomach
61
HeLa-S3
56
A549
56
brain
56
kidney
51
H1-hESC
51
lung
50
muscle of arm
48
small intestine
46
adrenal gland
44
neural progenitor cell
44
placenta
43
muscle of leg
40
large intestine
39
common myeloid progenitor, CD34-positive
39
left lung
39
liver
39
muscle of back
37
B cell
37
K562
36
thymus
35
endothelial cell
35
retina
34
right lung
33
islet of Langerhans
32
fibroblast
32
right kidney
31
hematopoietic multipotent progenitor cell
31
hepatocyte
31
macrophage
30
renal pelvis
29
renal cortex interstitium
27
CD4-positive, alpha-beta memory T cell
27
heart left ventricle
27
left kidney
26
adipose tissue
25
smooth muscle cell
25
spinal cord
24
pericyte cell
23
T cell
22
regulatory T cell
22
spleen
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
20
adipocyte
20
pigmented layer of retina
19
HFFc6
19
body of pancreas
19
pancreatic ductal cell
18
T-helper 1 cell
18
caudate nucleus
18
coronary artery
18
natural killer cell
18
right atrium auricular region
17
MCF-7
17
T-helper 17 cell
17
mononuclear cell
17
tibial artery
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
pancreas
16
pancreatic beta cell
psoas muscle
16
sigmoid colon
15
frontal cortex
15
ovary
15
pancreatic delta cell
15
subcutaneous adipose tissue
15
trophoblast cell
14
astrocyte
14
mesenchymal stem cell
14
pancreatic acinar cell
14
thyroid gland
13
T-helper 2 cell
13
ascending aorta
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
omental fat pad
13
substantia nigra
12
CD14-positive monocyte
12
GM12878
12
HepG2
12
endocrine pancreas
12
fibroblast of lung
12
foreskin keratinocyte
12
gastrocnemius medialis
12
mammary gland epithelial cell
12
pancreatic alpha cell
12
retinal pigment epithelial cell
12
skeletal muscle satellite cell
12
transverse colon
11
Ammon's horn
11
aorta
11
cerebellum
11
chorionic villus
11
muscle of trunk
11
putamen
11
testis
10
CD8-positive, alpha-beta T cell
10
Peyer's patch
10
fibroblast of dermis
10
keratinocyte
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
H9
9
erythroblast
9
kidney tubule cell
9
layer of hippocampus
9
skin fibroblast
9
upper lobe of left lung
8
colon epithelial cell
8
foreskin fibroblast
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
monocyte
8
naive T cell
8
neutrophil
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-SH
7
angular gyrus
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
glomerular endothelial cell
7
limb
7
lymphoblastoid cell line
7
osteoblast
6
22Rv1
6
Brodmann (1909) area 46
6
EndoC_BH1
6
GM19240
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
amygdala
6
anterior cingulate cortex
6
breast epithelium
6
cardiac muscle cell
6
colonic mucosa
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
memory B cell
6
mucosa of rectum
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
Date released
May, 2021
February, 2021
1
March, 2020
1
November, 2022
Software used
1
macs
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
2
AMP
RFA
1
AMP
1
AMP2
biosample_term_name!
psoas muscle
month_released!
February, 2021
May, 2021
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP