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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
6
ATAC-seq
1
RNA-seq
1
pCHi-C
Available data
6
bed bed3+
5
bed bed9
bigBed bed9
1
tsv
File set status
8
released
Genome assembly (visualization)
6
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
128
monocyte
67
heart
64
stomach
62
HeLa-S3
57
A549
54
brain
54
kidney
52
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
45
placenta
44
CD8-positive, alpha-beta T cell
44
neural progenitor cell
42
muscle of leg
41
large intestine
40
B cell
40
common myeloid progenitor, CD34-positive
39
left lung
39
liver
39
muscle of back
38
K562
37
endothelial cell
37
thymus
35
islet of Langerhans
35
retina
34
right lung
33
macrophage
32
fibroblast
32
hematopoietic multipotent progenitor cell
32
hepatocyte
32
right kidney
30
renal pelvis
29
renal cortex interstitium
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
left kidney
26
smooth muscle cell
26
spinal cord
24
adipocyte
24
heart left ventricle
24
pericyte cell
24
regulatory T cell
spleen
22
T cell
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
21
pancreatic ductal cell
21
tibial nerve
20
T-helper 1 cell
20
body of pancreas
20
pigmented layer of retina
19
HFFc6
19
T-helper 17 cell
19
natural killer cell
18
MCF-7
18
caudate nucleus
18
coronary artery
18
right atrium auricular region
18
trophoblast cell
17
mononuclear cell
17
pancreatic beta cell
17
psoas muscle
17
sigmoid colon
16
endothelial cell of hepatic sinusoid
16
ovary
16
pancreas
15
T-helper 2 cell
15
astrocyte
15
frontal cortex
15
pancreatic acinar cell
15
pancreatic delta cell
15
subcutaneous adipose tissue
15
thyroid gland
15
tibial artery
14
mesenchymal stem cell
14
pancreatic alpha cell
13
GM12878
13
HepG2
13
excitatory neuron
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
gastrocnemius medialis
13
heart right ventricle
13
neutrophil
13
omental fat pad
13
substantia nigra
13
transverse colon
12
ascending aorta
12
endocrine pancreas
12
endothelial cell of umbilical vein
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
muscle of trunk
12
retinal pigment epithelial cell
11
Ammon's horn
11
cerebellum
11
chorionic villus
11
erythroblast
11
fibroblast of dermis
11
keratinocyte
11
putamen
11
skeletal muscle myoblast
11
skeletal muscle satellite cell
11
testis
10
H9
10
Peyer's patch
10
foreskin fibroblast
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle tissue
9
aorta
9
kidney tubule cell
9
layer of hippocampus
9
osteoblast
9
skin fibroblast
9
upper lobe of left lung
8
SK-N-SH
8
colon epithelial cell
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
breast epithelium
7
cardiac muscle cell
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
glomerular endothelial cell
7
limb
7
lymphoblastoid cell line
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
amygdala
6
anterior cingulate cortex
6
colonic mucosa
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mast cell
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
thoracic aorta
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
Date released
6
May, 2021
February, 2021
1
March, 2020
1
November, 2022
Software used
6
macs
1
nospecificsoft_customcode
1
r
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
spleen
files.file_type!
bigBed bed9
month_released!
February, 2021
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP