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Citing CMDGA
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Annotation type
1
accessible chromatin
1
eQTL
1
gene expression
Annotation Category
1
Gene expression levels
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
6
adipocyte
4
skeletal muscle fiber
3
endothelial cell
3
mesenchymal stem cell
3
smooth muscle cell
3
type I muscle cell
3
type II muscle cell
2
ESC derived cell line
2
glial cell
2
leukocyte
2
neural cell
2
skeletal muscle satellite cell
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
islet of Langerhans
1
keratinocyte
1
layer of hippocampus
1
liver
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
3
epithelium
Date released
3
February, 2024
October, 2022
Software used
1
deeptools
1
macs
1
qTLtools
1
r
1
samtools
1
umitools
Lab
19
Bing Ren, UCSD
10
AMP-T2D consortium
4
Katalin Susztak, Upenn
3
Kyle Gaulton, UCSD
3
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP2
biosample_term_name!
cerebellum
month_released!
February, 2023
October, 2022
Showing 3 of 3 results
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FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP