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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
RNA-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
85
heart
73
brain
72
kidney
67
muscle of arm
64
stomach
62
lung
60
placenta
58
muscle of leg
56
large intestine
55
small intestine
54
H1-hESC
54
muscle of back
53
HeLa-S3
52
left lung
50
neural progenitor cell
48
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
left kidney
35
spinal cord
27
islet of Langerhans
23
EndoC_BH1
23
liver
22
K562
20
breast cancer cell
19
HFFc6
19
heart left ventricle
18
adipocyte
17
embryonic stem cell
17
muscle of trunk
17
retina
16
H9
16
HepG2
16
chorionic villus
16
induced pluripotent stem cell
14
heart right ventricle
13
spleen
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
11
GM12878
11
cardiac muscle cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
SK-N-DZ
10
SK-N-SH
10
cardiomyocytes
10
gastric cancer cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
HEK293
9
IMR-90
9
NAMALWA cell
9
chorion membrane
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
PC-9
8
SK-N-MC
8
WERI-Rb-1
8
endodermal cell
fibroblast cell line
8
limb
8
mesenchymal stem cell
8
mesendoderm
8
ovary
8
pituitary stalk
8
testis
7
AG04449 cell
7
AG04450 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Jurkat
7
MCF-7
7
MG63
7
NT2-D1 cell
7
T-cell acute lymphoblastic leukemia
7
WI38
7
adipose tissue
7
chondrocyte
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
hematopoietic multipotent progenitor cell
7
neuronal stem cell
7
pancreas
7
skeletal muscle tissue
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
Rh-4 cell
6
SGBS preadipocytes
6
acute myeloid leukemia
6
cardiac precursors (cardiac muscle cell)
6
hESC cell
6
iPSC derived cell line
6
mesodermal cell
6
neuroblastoma cell line
6
pancreatic ductal cell
6
psoas muscle
5
A549
5
A673
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
L1-S8
5
Panc1
5
RS4-11 cell
5
SJCRH30
5
U937
5
cardiomyocytes (cardiac muscle cell)
5
coronary artery
5
osteosarcoma
5
prostate cancer cell line
5
sigmoid colon
5
skin of body
5
umbilical cord
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B cell
4
COLO205
4
Caco-2 cell
4
DND-41
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
HUES48
4
KOPT-K1
4
L1-S8R
4
LNCAP
4
LoVo cell
4
MDA-MB-231 cell
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
NCI-H460 cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
SAEC
4
SK-N-SH_RA
4
T-47D cell
4
U-266 cell
4
U2OS
4
UCSF-4
4
WI-38 cell
4
adipose-derived stem cell
4
colon carcinoma
4
diffuse large B-cell lymphoma
4
esophageal squamous cell carcinoma
4
fibroblast of cardiac tissue
4
iPS DF 4.7 Cell Line
4
iPS DF 6.9
4
macrophage
4
putamen
4
squamous cell lung carcinoma
4
synovial sarcoma cell
Organ
2
epithelium
Date released
1
February, 2024
1
May, 2021
Software used
1
macs
1
r
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
RFA
2
AMP
biosample_term_name!
fibroblast cell line
left kidney
biosample_type!
primary cell
relevant_life_stage!
adult
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP