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Schema
Citing CMDGA
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Annotation type
7
gene expression
Annotation Category
7
Gene expression levels
Annotation type Category
3
RNA-seq
3
scRNA-seq
1
snRNA-seq
Available data
6
tsv
File set status
7
released
Genome assembly (visualization)
1
hg19
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
in vitro differentiated cells
Biosample term
41
heart
39
stomach
36
A549
33
brain
33
lung
32
muscle of arm
30
small intestine
29
adrenal gland
28
kidney
28
placenta
26
common myeloid progenitor, CD34-positive
26
large intestine
26
left lung
26
muscle of back
26
muscle of leg
22
right lung
22
thymus
21
hematopoietic multipotent progenitor cell
20
right kidney
18
B cell
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
epithelial cell of proximal tubule
16
liver
15
adipose tissue
15
glomerular endothelial cell
15
monocyte
15
neural progenitor cell
14
CD8-positive, alpha-beta memory T cell
14
spinal cord
13
T-helper 1 cell
13
islet of Langerhans
13
regulatory T cell
13
spleen
12
K562
12
T-helper 17 cell
12
hepatocyte
12
mononuclear cell
11
cardiomyocytes
11
heart left ventricle
10
H1-hESC
10
MCF-7
10
body of pancreas
10
sigmoid colon
10
trophoblast cell
9
T-helper 2 cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
ovary
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
8
CD14-positive monocyte
8
EndoC_BH1
8
T cell
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
gastrocnemius medialis
8
muscle of trunk
8
psoas muscle
8
thyroid gland
8
tibial nerve
8
transverse colon
7
caudate nucleus
7
endothelial cell
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
natural killer cell
7
retina
7
skeletal muscle tissue
7
testis
6
HeLa-S3
6
Peyer's patch
6
adipocyte
6
cerebellum
6
chorion membrane
6
endometrium adenocarcinoma
6
fibroblast of cardiac tissue
6
fibroblast of dermis
6
fibroblast of lung
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
layer of hippocampus
6
mammary gland epithelial cell
6
naive T cell
6
neurosphere
6
omental fat pad
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
right atrium auricular region
6
upper lobe of left lung
5
aorta
5
ascending aorta
5
coronary artery
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
kidney tubule cell
5
mesangial cell
5
mesenchymal stem cell
5
pancreatic stellate cell
5
skeletal muscle myoblast
5
subcutaneous adipose tissue
5
substantia nigra
5
temporal lobe
5
tibial artery
5
vagina
4
22Rv1
4
Brodmann (1909) area 46
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
SK-N-SH
4
T47D
4
angular gyrus
4
bone tissue
4
breast epithelium
4
bronchial epithelial cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
foreskin fibroblast
4
gamma-delta T cell
4
keratinocyte
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
neutrophil
4
osteoblast
4
pancreas
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
parathyroid adenoma
4
prostate gland
4
right renal cortex interstitium
4
right renal pelvis
4
skeletal muscle satellite cell
4
skin fibroblast
4
smooth muscle cell
4
stomach smooth muscle
4
thoracic aorta
4
tongue
4
trophoblast
4
urinary bladder
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
Organ
7
epithelium
Life stage
4
adult
1
fetal
Date released
4
February, 2021
2
May, 2021
1
February, 2024
Software used
18
macs
7
r
6
abc
2
deltasvm
2
rasqual
1
cicero
1
deeptools
1
eigenmt
1
qTLtools
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
pigmented layer of retina
lab.title!
Katalin Susztak, Upenn
Showing 7 of 7 results
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Download
FileSet
DSR771OBM
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP