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Citing CMDGA
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Annotation type
4
gene expression
1
accessible chromatin
Annotation Category
4
Gene expression levels
1
cis-regulatory elements
Annotation type Category
4
scRNA-seq
1
ATAC-seq
Available data
4
tsv
4
txt
1
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
15
kidney
4
endothelial cell
2
kidney distal convoluted tubule epithelial cell
2
renal principal cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
T-helper 17 cell
1
alternatively activated macrophage
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
natural killer cell
1
proximal tubule cells with injury markers
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
Organ
5
epithelium
1
kidney
Life stage
5
adult
Date released
5
August, 2021
Software used
4
r
4
seurat
1
macs
Lab
33
AMP-T2D consortium
19
Bing Ren, UCSD
6
Kyle Gaulton, UCSD
5
Katalin Susztak, Upenn
4
Stephen Parker, UMich
Project
5
AMP
RFA
5
AMP2
biosample_term_name!
left kidney
Showing 5 of 5 results
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Download
FileSet
DSR066QTW
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for epithelial cell of proximal tubule
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP