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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
3
gene expression
Annotation Category
4
cis-regulatory elements
3
Gene expression levels
Annotation type Category
4
ChIP-seq
3
scRNA-seq
Available data
46
bed bed3+
13
bigWig
8
tsv
4
bed bed9
3
txt
File set status
7
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
1
in vitro differentiated cells
Biosample term
16
epithelial cell of proximal tubule
14
glomerular endothelial cell
13
common myeloid progenitor, CD34-positive
9
CD4-positive, alpha-beta memory T cell
8
B cell
7
CD8-positive, alpha-beta memory T cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
mononuclear cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
4
CD14-positive monocyte
4
T cell
4
T-helper 17 cell
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
glomerular visceral epithelial cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
natural killer cell
4
trophoblast cell
3
T-helper 1 cell
3
T-helper 2 cell
3
adult endothelial progenitor cell
3
endothelial cell
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney interstitial cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary gland epithelial cell
3
mesangial cell
3
naive T cell
3
neurosphere
3
regulatory T cell
2
bronchial epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of prostate
2
fibroblast of breast
2
keratinocyte
2
kidney inner medulla collecting duct intercalated cell
2
kidney tubule cell
2
myoepithelial cell of mammary gland
2
neutrophil
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skin fibroblast
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD1c-positive myeloid dendritic cell
1
CD8-positive, alpha-beta T cell
1
alternatively activated macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
epithelial cell of esophagus
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
foreskin melanocyte
1
hepatic stellate cell
1
hepatocyte
1
inflammatory macrophage
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
luminal epithelial cell of mammary gland
1
lung microvascular endothelial cell
1
macrophage
1
mammary stem cell
1
mesenchymal stem cell
1
non-pigmented ciliary epithelial cell
1
osteoblast
1
pericyte cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortical epithelial cell
1
renal principal cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
stromal cell of bone marrow
Organ
4
embryo
4
extraembryonic component
3
epithelium
Life stage
4
embryonic
3
adult
Date released
4
September, 2022
3
August, 2021
Software used
4
chromhmm
3
r
3
seurat
Lab
4
AMP-T2D consortium
3
Katalin Susztak, Upenn
Project
7
AMP
RFA
4
AMP
3
AMP2
month_released!
February, 2023
Showing 7 of 7 results
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Download
FileSet
DSR731TNX
released
Annotation file set
: Chromatin states for BSS01856 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412BIH
released
Annotation file set
: Chromatin states for BSS01855 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014UYG
released
Annotation file set
: Chromatin states for BSS01853 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR154AJI
released
Annotation file set
: Chromatin states for BSS01852 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP