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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
variant allelic effects
1
accessible chromatin
1
eQTL
Annotation Category
3
Gene expression levels
3
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
snATAC-seq
2
RNA-seq
1
scRNA-seq
1
snRNA-seq
Available data
4
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
in vitro differentiated cells
tissue
Biosample term
118
monocyte
52
HeLa-S3
38
H1-hESC
34
CD8-positive, alpha-beta T cell
19
HFFc6
17
K562
15
CD14-positive monocyte
15
EndoC_BH1
14
endothelial cell of hepatic sinusoid
12
hepatocyte
11
embryonic stem cell
10
pituitary stalk
9
extended pluripotent stem (EPS) cells
9
progenitor cell of endocrine pancreas
8
adipocyte
7
GM12878
7
H9
7
T-helper 1 cell
7
endothelial cell
7
pancreatic ductal cell
7
regulatory T cell
6
T-helper 17 cell
6
dendritic cell
6
fibroblast
6
lymphocyte
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
skeletal muscle fiber
6
smooth muscle cell
5
macrophage
5
neutrophil
4
B cell
4
CyT49
4
HUES8
4
iPSC derived cell line
4
mesenchymal stem cell
4
pancreatic acinar cell
3
CD4-positive helper T cell
3
Schwann cell
3
T-helper 2 cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
hepatocyte(AFP)
3
memory B cell
3
myofibroblast cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic polypeptide-secreting cell
3
type I muscle cell
3
type II muscle cell
2
BJAB cell
2
HCT116
2
Jurkat
2
MCF 10A cell
2
T cell
2
T follicular helper cell
2
T-cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
astrocyte
2
basal cell
2
cardiac muscle cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
epithelial cell of esophagus
2
gamma-delta T cell
2
glial cell
2
goblet cell
2
keratinocyte
2
leukocyte
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
neural cell
2
pancreatic alpha cell
2
skeletal muscle satellite cell
2
trophoblast cell
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HepG2
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
activated pancreatic stellate cell
1
bipolar neuron
1
bronchial goblet cell
1
cardiac fibroblast
1
cardiac muscle cell (pacemaker cell)
1
cardiomyocytes (cardiac muscle cell)
1
central memory CD4-positive, alpha-beta T cell
1
common myeloid progenitor, CD34-positive
1
cortical cell of adrenal gland
1
cytotoxic T cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
excitatory neuron
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
granulosa cell
1
hematopoietic multipotent progenitor cell
1
hippocampal neuron
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mammary gland epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesendoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
mesothelial cell
1
myeloid dendritic cell
1
myotube
1
naive B cell
1
naive regulatory T cell
1
natural killer cell
1
neuronal stem cell
1
osteoblast
1
pancreatic A cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
preadipocyte
1
quiescent pancreatic stellate cell
1
skeletal muscle myoblast
1
smooth muscle cell of the coronary artery
1
stem cell
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
Organ
7
epithelium
Life stage
1
adult
Date released
16
November, 2021
7
February, 2021
5
February, 2024
4
August, 2021
2
January, 2021
2
May, 2021
2
May, 2022
1
February, 2023
October, 2022
Software used
3
r
2
deltasvm
1
deeptools
1
macs
1
qTLtools
1
samtools
1
umitools
Lab
3
Stephen Parker, UMich
2
AMP-T2D consortium
2
Bing Ren, UCSD
Project
7
AMP
RFA
4
AMP
3
AMP2
biosample_type!
tissue
month_released!
October, 2022
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR771OBM
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669UJX
released
Annotation file set
: Gene expression annotation of endothelial cell_EC ISL1-PECAM1+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP