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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
variant allelic effects
1
eQTL
1
gene expression
Annotation Category
3
Genetic variant effects
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
5
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
1
tissue
Biosample term
14
endothelial cell of hepatic sinusoid
11
hepatocyte
8
fibroblast
7
endothelial cell
7
mature neutrophil
7
smooth muscle cell
6
olfactory receptor cell
6
skeletal muscle fiber
5
CD14-positive, CD16-negative classical monocyte
5
T-helper 1 cell
5
regulatory T cell
4
T-helper 17 cell
4
alternatively activated macrophage
4
macrophage
4
mesenchymal stem cell
4
type I muscle cell
4
type II muscle cell
3
CD4-positive, alpha-beta T cell
3
T cell
3
adipocyte
3
enterocyte
3
inflammatory macrophage
3
leukocyte
3
myofibroblast cell
3
skeletal muscle satellite cell
2
Schwann cell
2
basal cell
2
epithelial cell of esophagus
2
erythroblast
2
glial cell
2
goblet cell
2
neural cell
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
vascular associated smooth muscle cell
1
B cell
1
B-1a B cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
T-helper 2 cell
1
astrocyte
1
bronchial goblet cell
1
cardiac muscle cell
1
central memory CD4-positive, alpha-beta T cell
1
central memory CD8-positive, alpha-beta T cell
1
cortical cell of adrenal gland
1
effector memory CD4-positive, alpha-beta T cell
1
effector memory CD8-positive, alpha-beta T cell
1
granulosa cell
1
keratinocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mature eosinophil
1
memory B cell
1
mesothelial cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
pancreatic alpha cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
preadipocyte
1
thyroid follicular cell
1
type II pneumocyte
Organ
7
epithelium
Life stage
1
adult
1
unknown
Date released
16
November, 2021
7
February, 2021
5
February, 2024
4
August, 2021
3
May, 2024
2
January, 2021
2
May, 2022
1
February, 2023
1
May, 2021
1
October, 2022
Software used
3
macs
2
deltasvm
1
deeptools
1
qTLtools
1
r
1
samtools
1
umitools
Lab
3
Bing Ren, UCSD
3
Stephen Parker, UMich
1
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
Showing 7 of 7 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP