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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
bed bed3+
2
bed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
28
islet of Langerhans
24
heart
23
kidney
21
monocyte
21
stomach
20
brain
18
A549
18
lung
17
epithelial cell of proximal tubule
17
liver
16
adrenal gland
16
glomerular endothelial cell
16
induced pluripotent stem cell
16
muscle of arm
16
small intestine
15
hepatocyte
15
muscle of leg
15
placenta
14
subcutaneous adipose tissue
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
muscle of back
12
adipose tissue
12
neural progenitor cell
12
regulatory T cell
11
EndoC_BH1
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
right kidney
11
right lung
11
thymus
11
tibial nerve
10
B cell
10
endothelial cell
10
heart left ventricle
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
H1-hESC
9
body of pancreas
9
caudate nucleus
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
macrophage
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
8
ascending aorta
8
coronary artery
8
frontal cortex
8
omental fat pad
8
putamen
8
right atrium auricular region
8
spinal cord
8
spleen
8
substantia nigra
8
tibial artery
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mature neutrophil
7
pancreatic acinar cell
6
K562
6
T cell
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
neutrophil
6
ovary
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
skeletal muscle tissue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
amygdala
5
anterior cingulate cortex
5
gastrocnemius medialis(Muscle - Skeletal)
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mesangial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
nucleus accumbens
5
pancreatic stellate cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
temporal lobe
5
testis
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
angular gyrus
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
foreskin keratinocyte
4
gamma-delta T cell
4
gastrocnemius medialis
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
mesenchymal stem cell
4
muscle of trunk
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
psoas muscle
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
skin of body
4
vagina
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
Organ
3
blood vessel
3
epithelium
3
vasculature
3
vein
Life stage
3
newborn
Date released
January, 2020
2
September, 2022
1
May, 2020
Software used
2
chromhmm
1
deltasvm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
muscle of back
files.file_type!
bed bed3+
month_released!
January, 2020
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR088CRI
released
Annotation file set
: Variant allelic effects of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP