Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
127
monocyte
43
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
35
B cell
32
endothelial cell
29
fibroblast
28
hepatocyte
28
macrophage
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
24
regulatory T cell
22
T cell
22
pericyte cell
21
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
smooth muscle cell
19
T-helper 17 cell
18
mononuclear cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
natural killer cell
16
pancreatic acinar cell
16
pancreatic delta cell
16
pancreatic ductal cell
15
T-helper 2 cell
15
astrocyte
15
endothelial cell of umbilical vein
15
pancreatic alpha cell
14
trophoblast cell
13
fibroblast of lung
13
keratinocyte
13
neutrophil
12
excitatory neuron
12
fibroblast of cardiac tissue
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
skeletal muscle myoblast
12
skeletal muscle satellite cell
11
erythroblast
11
fibroblast of dermis
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
osteoblast
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neurosphere
9
skeletal muscle fiber
9
skin fibroblast
8
glutamatergic neuron
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
epithelial cell of prostate
7
foreskin fibroblast
7
hepatic stellate cell
7
luminal epithelial cell of mammary gland
7
mature neutrophil
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
fibroblast of breast
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
gamma-delta T cell
4
iris pigment epithelial cell
4
mammary epithelial cell
4
mast cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pulmonary artery endothelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
foreskin melanocyte
3
glial cell
3
goblet cell
3
leukocyte
3
lung microvascular endothelial cell
3
mammary stem cell
3
mesangial cell
3
microglial cell
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
plasma cell
3
plasmacytoid dendritic cell
3
regular cardiac myocyte
3
schwann cell
3
smooth muscle cell of the coronary artery
3
stromal cell of bone marrow
3
thyroid follicular cell
3
type B pancreatic cell
2
Muller cell
2
T-cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
aortic adventitial fibroblast
2
articular chondrocyte
2
basal cell of epidermis
Organ
4
intestine
Date released
4
November, 2021
Software used
2
abc
2
macs
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
month_released!
February, 2021
organ_slims!
kidney
placenta
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR814KVL
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR483TPA
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR300AWQ
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR441RLT
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE