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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
90
heart
63
small intestine
56
large intestine
34
heart left ventricle
23
sigmoid colon
21
coronary artery
19
heart right ventricle
19
right atrium auricular region
19
transverse colon
17
fibroblast of cardiac tissue
14
Peyer's patch
12
left cardiac atrium
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
8
right cardiac atrium
7
SW480
7
smooth muscle cell of the coronary artery
6
HCT116
6
enterocyte
5
endocardial cell
5
left ventricle myocardium
5
tracheal epithelial cell
4
HCT-116 cell
4
RKO
4
cardiac fibroblast
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
endothelial cell of coronary artery
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
2
ventricular cardiac muscle cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
aortic valve
1
cardiac atrium fibroblast
1
cardiac ventricle
1
cardiac ventricle fibroblast
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
fetal heart
1
intestinal epithelial cell
1
intestinal epithelium
1
mitral valve
1
pulmonary valve
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
tricuspid valve
Organ
4
intestine
0
heart
0
trachea
Date released
4
November, 2021
Software used
2
abc
2
macs
Lab
4
Bing Ren, UCSD
Project
4
ENCODE
RFA
4
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR814KVL
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR483TPA
released
Annotation file set
: Target gene predictions of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR300AWQ
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR441RLT
released
Annotation file set
: Accessible chromatin annotation of Smooth Muscle (Colon) 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE