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Clear Filters
Annotation type
  • 3accessible chromatin
  • 3variant allelic effects
Annotation Category
  • 3Genetic variant effects
  • 3cis-regulatory elements
Annotation type Category
  • 6snATAC-seq
Available data
  • 6bed bed3+
  • 3bigWig
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
  • 3GRCh38
Organism
  • 6Homo sapiens
Biosample type
  • 6primary cell
Biosample term
  • 63small intestine
  • 56large intestine
  • 23sigmoid colon
  • 19transverse colon
  • 14Peyer's patch
  • 10colonic mucosa
  • 9colon epithelial cell
  • 9duodenal mucosa
  • 9mucosa of rectum
  • 8HT-29
  • 8muscle layer of colon
  • 8muscle layer of duodenum
  • 7SW480
  • 6HCT116
  • 6enterocyte
  • 4HCT-116 cell
  • 4RKO
  • 4enteric smooth muscle cell
  • 4rectum smooth muscle tissue
  • 2enterocyte of epithelium of small intestine
  • 2paneth cell
  • 2small intestine goblet cell
  • 1Caco-2
  • 1Crypt of Lieberkuhn
  • 1LoVo
  • 1colon
  • 1colon - sigmoid
  • 1colon - transverse
  • 1colon sigmoid
  • 1crypt of Lieberkuhn
  • 1intestinal epithelial cell
  • 1intestinal epithelium
  • 1rectal smooth muscle tissue
  • 1small intestine - terminal Ileum
Organ
  • 6epithelium
  • 6intestine
Date released
  • 3February, 2024
  • 3November, 2021
Software used
  • 3deltasvm
  • 3macs
Lab
  • 6Bing Ren, UCSD
Project
  • 3AMP
  • 3ENCODE
Collection Tags
  • 3AMP
  • 3DGA
  • 3T2DKP
RFA
  • 3AMP
  • 3ENCODE3

Showing 6 of 6 results

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  • FileSet

    DSR989BFJ

    released

    Annotation file set: Accessible chromatin annotation of Fetal Enterocyte 3 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR315JBQ

    released

    Annotation file set: Accessible chromatin annotation of Fetal Enterocyte 2 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR510QEM

    released

    Annotation file set: Accessible chromatin annotation of Fetal Enterocyte 1 from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: ENCODE
  • FileSet

    DSR972LVJ

    released

    Annotation file set: Variant allelic effects annotation of Enterocytes (sub-type3) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR623GGP

    released

    Annotation file set: Variant allelic effects annotation of Enterocytes (sub-type2) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR654PGN

    released

    Annotation file set: Variant allelic effects annotation of Enterocytes from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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