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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
62
small intestine
56
large intestine
54
H1-hESC
23
sigmoid colon
23
trophoblast cell
18
transverse colon
16
H9
16
chorionic villus
14
Peyer's patch
11
trophoblast
10
colonic mucosa
10
endodermal cell
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
mesodermal cell
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
enterocyte
5
CyT49
5
H4
5
HUES64
5
ectodermal cell
4
ELF-1
4
HCT-116 cell
4
HUES48
4
RKO
4
UCSF-4
4
embryonic facial prominence
4
enteric smooth muscle cell
4
rectum smooth muscle tissue
3
ES-I3
3
cardiac mesoderm primordium
3
hESC H9
3
primordial germ cell
2
enterocyte of epithelium of small intestine
2
first pancreatic bud
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
H1
1
H7
1
LoVo
1
cardiogenic mesoderm
1
colon
1
colon - sigmoid
1
colon - transverse
1
crypt of Lieberkuhn
1
embryonic fibroblast
1
intestinal epithelial cell
1
intestinal epithelium
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
morula
1
placental hematopoietic stem cell
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
trophoblast giant cell
Organ
2
epithelium
2
intestine
2
small intestine
0
embryo
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
month_released!
January, 2022
Showing 2 of 2 results
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Download
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE