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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
63
small intestine
56
large intestine
32
adipose tissue
23
sigmoid colon
21
subcutaneous adipose tissue
19
transverse colon
18
omental fat pad
14
Peyer's patch
10
colonic mucosa
9
colon epithelial cell
9
duodenal mucosa
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
8
muscle layer of duodenum
7
SW480
6
HCT116
6
enterocyte
6
subcutaneous abdominal adipose tissue
4
HCT-116 cell
4
RKO
4
enteric smooth muscle cell
4
femur
4
rectum smooth muscle tissue
4
visceral abdominal adipose tissue
3
arm bone
3
leg bone
2
adipose tissue derived mesenchymal stem cell
2
enterocyte of epithelium of small intestine
2
paneth cell
2
small intestine goblet cell
1
omental fat pad
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
intestinal epithelial cell
1
intestinal epithelium
1
mesenchymal stem cell of adipose
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectal smooth muscle tissue
1
small intestine - terminal Ileum
1
white adipose cell
1
white adipose tissue
Organ
2
epithelium
2
intestine
2
small intestine
0
adipose tissue
0
skeleton
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
organ_slims!
embryo
Showing 2 of 2 results
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Download
FileSet
DSR802OCO
released
Annotation file set
: Target gene predictions of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE