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Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
variant allelic effects
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
2
snATAC-seq
Available data
5
bed bed3+
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
9
esophagus muscularis mucosa
9
esophagus squamous epithelium
8
esophagus
5
epithelial cell of esophagus
4
smooth muscle cell of the esophagus
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
Organ
5
epithelium
5
esophagus
Life stage
3
unknown
Date released
2
February, 2024
2
September, 2022
1
February, 2021
Software used
2
deltasvm
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed9
month_released!
January, 2021
organ_slims!
bronchus
Showing 5 of 5 results
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Download
FileSet
DSR436AEJ
released
Annotation file set
: Candidate regulatory elements for BSS00307 epithelial cell of esophagus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR005XGT
released
Annotation file set
: Target gene predictions for BSS00307 epithelial cell of esophagus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR685PAG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of esophagus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR545JGJ
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR761QWI
released
Annotation file set
: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP