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Clear Filters
Annotation type
  • 2candidate regulatory elements
  • 2variant allelic effects
  • 1chromatin state
  • 1target gene predictions
Annotation Category
  • 3cis-regulatory elements
  • 2Genetic variant effects
  • 1Target gene links
Annotation type Category
  • 4ChIP-seq
  • 3DNase-seq
  • 2snATAC-seq
Available data
  • 5bed bed3+
  • 1bed bed9
File set status
  • 6released
Genome assembly (visualization)
  • 6hg19
  • 1GRCh38
Organism
  • 6Homo sapiens
Biosample type
  • 6primary cell
Biosample term
  • 11esophagus muscularis mucosa
  • 11esophagus squamous epithelium
  • 10esophagus
  • 6epithelial cell of esophagus
  • 4smooth muscle cell of the esophagus
  • 1esophagus - mucosa
  • 1esophagus - muscularis
  • 1esophagus mucosa
Organ
  • 6epithelium
  • 6esophagus
Life stage
  • 4unknown
Date released
  • 3September, 2022
  • 2February, 2024
  • 1February, 2021
Software used
  • 2deltasvm
  • 2r
  • 1chromhmm
  • 1encode-ccres
Lab
  • 4AMP-T2D consortium
  • 2Bing Ren, UCSD
Project
  • 6AMP
Collection Tags
  • 3EpiMap
  • 2DGA
  • 1ENCODE
RFA
  • 6AMP

Showing 6 of 6 results

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  • FileSet

    DSR436AEJ

    released

    Annotation file set: Candidate regulatory elements for BSS00307 epithelial cell of esophagus from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR005XGT

    released

    Annotation file set: Target gene predictions for BSS00307 epithelial cell of esophagus from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR929IPZ

    released

    Annotation file set: Chromatin states for BSS00307 using the 18-state Roadmap model from EpiMap
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR685PAG

    released

    Annotation file set: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of esophagus
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR545JGJ

    released

    Annotation file set: Variant allelic effects annotation of Esophageal epithelial cells (sub-type2) from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
  • FileSet

    DSR761QWI

    released

    Annotation file set: Variant allelic effects annotation of Esophageal epithelial cells from snATAC from Bing Ren Lab
    Lab: Bing Ren, UCSD
    Project: AMP
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