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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
7
DNase-seq
6
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
3
cell line
0
tissue
Biosample term
109
monocyte
66
heart
65
stomach
52
brain
51
muscle of arm
50
lung
47
small intestine
46
CD8-positive, alpha-beta T cell
46
adrenal gland
45
placenta
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
37
thymus
35
retina
34
right lung
32
liver
31
endothelial cell
30
B cell
27
CD14-positive monocyte
27
fibroblast
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
21
pericyte cell
20
adipose tissue
20
pigmented layer of retina
19
hepatocyte
19
macrophage
19
pancreas
19
smooth muscle cell
18
sigmoid colon
17
islet of Langerhans
16
T cell
16
psoas muscle
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
keratinocyte
15
natural killer cell
15
ovary
14
body of pancreas
14
gastrocnemius medialis
14
mononuclear cell
14
osteoblast
14
pancreatic ductal cell
14
thyroid gland
14
tibial nerve
14
transverse colon
14
trophoblast cell
13
fibroblast of lung
13
heart right ventricle
13
mammary epithelial cell
13
muscle of trunk
13
testis
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
caudate nucleus
12
chorionic villus
12
coronary artery
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
layer of hippocampus
12
pancreatic beta cell
12
skeletal muscle myoblast
11
Peyer's patch
11
endocrine pancreas
11
pancreatic alpha cell
11
prostate gland
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
left cardiac atrium
10
mammary gland epithelial cell
10
neurosphere
10
pancreatic acinar cell
10
pancreatic delta cell
10
right atrium auricular region
10
skeletal muscle tissue
10
tibial artery
9
breast epithelium
9
erythroblast
9
esophagus squamous epithelium
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
retinal pigment epithelial cell
9
skeletal muscle satellite cell
9
substantia nigra
9
temporal lobe
9
trophoblast
8
aorta
8
ascending aorta
8
colonic mucosa
8
dermis blood vessel endothelial cell
8
esophagus muscularis mucosa
8
glutamatergic neuron
8
lower leg skin
8
thoracic aorta
7
cardiac muscle cell
7
cerebellum
7
chorion membrane
7
cingulate gyrus
7
duodenal mucosa
7
epithelial cell of prostate
7
esophagus
7
eye
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
frontal cortex
7
mucosa of rectum
7
parathyroid adenoma
7
skeletal muscle fiber
7
skin fibroblast
7
stomach smooth muscle
7
subcutaneous adipose tissue
7
tongue
7
type II pneumocyte
6
Ammon's horn
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
angular gyrus
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of breast
6
gastroesophageal sphincter
6
globus pallidus
6
hepatic stellate cell
6
limb
6
luminal epithelial cell of mammary gland
6
memory B cell
6
midbrain
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
occipital lobe
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
putamen
6
subcutaneous abdominal adipose tissue
6
type I muscle cell
6
type II muscle cell
6
urinary bladder
6
uterus
6
vagina
5
cardiac fibroblast
5
CD4-positive helper T cell
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
inhibitory neuron
5
mast cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
superior temporal gyrus
5
tracheal epithelial cell
5
umbilical cord
4
Brodmann (1909) area 46
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiac fibroblast
4
cerebellar cortex
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
medulla oblongata
4
megakaryocyte
4
mesothelial cell
4
middle frontal gyrus
4
non-pigmented ciliary epithelial cell
Organ
7
epithelium
7
prostate gland
Life stage
6
unknown
Date released
4
September, 2022
2
February, 2021
1
May, 2021
Software used
4
r
2
encode-ccres
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
organ_slims!
kidney
Showing 7 of 7 results
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Download
FileSet
DSR374VHN
released
Annotation file set
: Candidate regulatory elements for BSS00309 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR286WGH
released
Annotation file set
: Candidate regulatory elements for BSS00308 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR120KRM
released
Annotation file set
: Target gene predictions for BSS00309 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR498KQI
released
Annotation file set
: Target gene predictions for BSS00308 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113LMW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of prostate
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR965YPT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of prostate
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR327KAR
released
Annotation file set
: enhancer-gene predicton of epithelial_cell_of_prostate-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP