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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
binding sites
1
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
Available data
15
tsv
15
txt
7
bed bed3+
2
bigWig
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
58
kidney
31
renal cortex interstitium
31
renal pelvis
31
right kidney
27
left kidney
10
left renal pelvis
10
right renal pelvis
9
left renal cortex interstitium
8
HEK293
8
right renal cortex interstitium
7
glomerular visceral epithelial cell
7
kidney tubule cell
6
epithelial cell of proximal tubule
6
renal cortical epithelial cell
5
glomerular endothelial cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
renal cell carcinoma
3
G401
3
cortex of kidney
2
HEK293T
2
kidney epithelium
1
left kidney
1
RCC
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Organ
7
epithelium
7
kidney
Life stage
3
unknown
1
adult
Date released
2
September, 2022
1
August, 2021
1
February, 2021
1
January, 2020
1
May, 2020
1
October, 2022
Software used
2
macs
2
r
1
chromhmm
1
deltasvm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
7
AMP
RFA
6
AMP
1
AMP2
organ_slims!
vasculature
Showing 7 of 7 results
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Download
FileSet
DSR081IKY
released
Annotation file set
: Binding sites annotation for epithelial cell of proximal tubule (RPTEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412AJP
released
Annotation file set
: Target gene predictions for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711XKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of proximal tubule
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493RJK
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Intercalated cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR347BGE
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP