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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
35
fibroblast
32
adipose tissue
29
adipocyte
25
tibial nerve
24
pericyte cell
21
subcutaneous adipose tissue
19
foreskin fibroblast
19
mesenchymal stem cell
19
tibial artery
18
gastrocnemius medialis
18
omental fat pad
17
fibroblast of cardiac tissue
17
osteoblast
16
fibroblast of lung
12
fibroblast of dermis
12
hepatic stellate cell
12
skin fibroblast
10
lower leg skin
10
pancreatic stellate cell
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
limb
7
GM23248
7
chondrocyte
7
mesangial cell
6
subcutaneous abdominal adipose tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
cardiac fibroblast
5
cartilage tissue
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
fibroblast of the conjunctiva
5
gastrocnemius medialis(Muscle - Skeletal)
4
HT1080
4
adult endothelial progenitor cell
4
bone tissue
4
brain pericyte
4
femur
4
fibroblast of gingiva
4
preadipocyte
4
stromal cell of bone marrow
4
visceral abdominal adipose tissue
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
arm bone
3
leg bone
3
pancreatic quiescent stellate cell
3
pulmonary interstitial fibroblast
2
hindlimb muscle
2
muscle of leg
2
adipose tissue derived mesenchymal stem cell
2
articular chondrocyte
2
columnar chondrocyte
2
extracellular matrix secreting cell
2
fat cell
2
forelimb muscle
2
luteal cell
2
skin of forearm
2
stromal cell
1
omental fat pad
1
Adipose SGBS cell line (adipocyte)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
SGBS preadipocytes
1
activated pancreatic stellate cell
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
embryonic fibroblast
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
hindlimb muscle
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pericardium fibroblast
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
quiescent pancreatic stellate cell
1
skin - sun exposed (lower leg)
1
white adipose cell
1
white adipose tissue
Organ
3
connective tissue
1
limb
1
skin of body
Date released
2
April, 2020
1
May, 2021
Software used
1
abc
Lab
2
Xin Sun, UCSD
1
Jesse Engreitz, Stanford University
Project
2
LungMap
1
AMP
RFA
2
LungMap2
1
AMP
Showing 3 of 3 results
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Download
FileSet
DSR666HIS
released
Annotation file set
: ATAC-seq peaks in matrix fibroblast 1 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR190LDQ
released
Annotation file set
: ATAC-seq peaks in matrix fibroblast 2 from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR252OJH
released
Annotation file set
: enhancer-gene predicton of fibroblast_of_arm-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP