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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
15
kidney
5
left cardiac atrium
4
cartilage tissue
4
liver
3
islet of Langerhans
3
subcutaneous adipose tissue
2
adrenal gland
2
pancreatic ductal cell
2
pancreatic stellate cell
2
stomach
1
Pancreatic islets
1
Schwann cell
1
adipose tissue
1
beige adipocyte
1
body of pancreas
1
breast epithelium
1
cardiac ventricle
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
coronary artery
1
duodenal mucosa
1
endothelial cell
1
gastrocnemius medialis
1
large intestine
1
layer of hippocampus
1
mid-frontal lobe
1
mucosa of rectum
1
muscle of leg
1
muscle of trunk
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
placenta
1
psoas muscle
1
rectum smooth muscle tissue
1
sigmoid colon
1
skeletal muscle
1
small intestine
1
spinal cord
1
spleen
1
stomach smooth muscle
1
substantia nigra
1
synovial joint
1
temporal lobe
1
thymus
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
4
liver
Date released
2
May, 2022
1
August, 2017
1
May, 2021
Software used
1
abc
1
chromhmm
1
eigenmt
1
macs
1
rasqual
Lab
AMP-T2D consortium
2
Karen Mohlke, UNC
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
4
AMP
RFA
4
AMP
biosample_term_name!
thyroid gland
lab.title!
AMP-T2D consortium
Showing 4 of 4 results
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Download
FileSet
DSR303OZW
released
Annotation file set
: Accessible chromatin annotation(consensus peaks) of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR494KQG
released
Annotation file set
: enhancer-gene predicton of liver-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR027410
released
Annotation file set
: ChromHMM 13-state model for Liver
Lab:
Stephen Parker, UMich
Project:
AMP